Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq93 176 8e-39
seq99 141 2e-28
seq62 105 1e-17
seq65 87.8 3e-12
>seq93
Length=1762202
Score = 176 bits (194), Expect = 8e-39
Identities = 168/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || || | || | || || |||||||| || ||||| || || ||||||
Sbjct 806109 CCTCCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAG 806050
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | ||||| || ||||| || || | |||||||||||| ||
Sbjct 806049 AGGGTTCGTCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGAGGG 805990
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| || ||||| | ||| ||| ||||||||||| | ||||||||
Sbjct 805989 ATGCCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAGGATTCTACC 805930
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449
|||| ||||||||| ||||| || |||||||||||
Sbjct 805929 TCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTGAC 805895
Score = 176 bits (194), Expect = 8e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||||| || |||||||| || || || || || || ||
Sbjct 806337 CCACCACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGAC 806278
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || || ||||| || || ||||| |||||||| || || | ||| || ||||||||
Sbjct 806277 AGGGTTCTGCCATCCTCCAATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGG 806218
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||||||||| | ||| ||| ||||| ||||| | |||||| ||
Sbjct 806217 ATACCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACC 806158
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| ||||| || | |||||||||||| ||||||||
Sbjct 806157 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111
Score = 134 bits (148), Expect = 3e-26
Identities = 155/206 (75%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | || | || || ||||||||||| ||||| |||||||| ||
Sbjct 805826 CCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAA 805767
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | |||||| || ||||| || | | |||||||||||| |||
Sbjct 805766 AGAGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGGA 805707
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
||||| |||||||| |||||||| ||| || |||||||| || ||| || || ||
Sbjct 805706 ATGCCCTCCTTGTCCTGAATCTTGCTCTTTACATTATCGATGGTATC-GCTGGACTCAAC 805648
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | ||||||||| || || ||||
Sbjct 805647 CTCGAGGGTGATGGTCTTGCCAGTGA 805622
>seq99
Length=1752785
Score = 141 bits (156), Expect = 2e-28
Identities = 141/180 (78%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
||||||||||| |||||| || || | ||||| || | ||||| || ||||| ||
Sbjct 456626 TTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATC 456567
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | ||||||||||||||| || ||||||||||| || ||||| | ||||||| |||
Sbjct 456566 AGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 456507
Query 68394 ATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| ||||| ||| || || || || | |||||| || || |||||||||||||| |||||
Sbjct 456506 ATAGTGTC-GCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTAACGAA 456448
>seq62
Length=1271336
Score = 105 bits (116), Expect = 1e-17
Identities = 133/180 (74%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| || ||||| || || || || || | ||||| || | ||||| || || || ||
Sbjct 898283 TTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATC 898342
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| || || ||||| ||||| || || |||||||| || ||||| | ||||||| |||
Sbjct 898343 AATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 898402
Query 68394 ATGGTGTCTGCTG-ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| || || |||| | || || || | |||||||| || ||||| ||||||||||||||
Sbjct 898403 ATCGTATC-GCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 898461
>seq65
Length=1630678
Score = 87.8 bits (96), Expect = 3e-12
Identities = 210/315 (67%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 59294 AAGCCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGC 59353
|| || |||||||| || ||| ||| |||||||||||||| ||||| | |||||
Sbjct 382617 AAACCTGTGTGGACATCTTCGGAGAAACCAATCTCAGCAGTACCGCCAACTTCAACAAGT 382676
Query 59354 GCCTCTCGGCGGTAGACTGCGCATGTCCCGACGCACACGGCGCCGCCAAAGGTGTCGCGA 59413
|| || || || || || ||| | || ||||| | | | | || | | | ||||
Sbjct 382677 GCTTCGCGACGATAAACCGCGTTCGATCCAACGCAAATCGAGGCACCCCATCTATTGCGA 382736
Query 59414 GAAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAA 59473
|| | | | || || ||||||||||| | || || | |||||||||||
Sbjct 382737 TTGACTTCCACAACTCGATAAAACAGTTCCTGAATACCGCCTGCTCCTTGCTCAACCCAA 382796
Query 59474 GTCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCA 59533
||||| || || |||||| || || | || || || || |||| |||
Sbjct 382797 GTCTGATCATCCGTGACGCGGAAGAATTGTGGAGATTGAACGATAGCAGTCTTCGGATCA 382856
Query 59534 TGGGAAAAGTAG-GGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATC 59592
| || | || | || || | ||| | |||| ||||||| || |||||||| || || ||
Sbjct 382857 -GCGAGATGTTGAGGGATCAATTCGTAGAGGAAGTCAGGACGAGGACAGAAATCGGCGTC 382915
Query 59593 GAAGATGGCAAAGAA 59607
|||||||| ||||||
Sbjct 382916 GAAGATGGTAAAGAA 382930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921620038342600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |