Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq93 176 8e-39 seq99 141 2e-28 seq62 105 1e-17 seq65 87.8 3e-12 >seq93 Length=1762202 Score = 176 bits (194), Expect = 8e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | || || |||||||| || ||||| || || |||||| Sbjct 806109 CCTCCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAG 806050 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| || ||||| || || | |||||||||||| || Sbjct 806049 AGGGTTCGTCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGAGGG 805990 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| | ||| ||| ||||||||||| | |||||||| Sbjct 805989 ATGCCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAGGATTCTACC 805930 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 |||| ||||||||| ||||| || ||||||||||| Sbjct 805929 TCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTGAC 805895 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || |||||||| || || || || || || || Sbjct 806337 CCACCACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGAC 806278 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||| || || ||||| |||||||| || || | ||| || |||||||| Sbjct 806277 AGGGTTCTGCCATCCTCCAATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGG 806218 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| | ||| ||| ||||| ||||| | |||||| || Sbjct 806217 ATACCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACC 806158 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| ||||| || | |||||||||||| |||||||| Sbjct 806157 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111 Score = 134 bits (148), Expect = 3e-26 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || ||||||||||| ||||| |||||||| || Sbjct 805826 CCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAA 805767 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || | | |||||||||||| ||| Sbjct 805766 AGAGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGGA 805707 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| |||||||| ||| || |||||||| || ||| || || || Sbjct 805706 ATGCCCTCCTTGTCCTGAATCTTGCTCTTTACATTATCGATGGTATC-GCTGGACTCAAC 805648 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 805647 CTCGAGGGTGATGGTCTTGCCAGTGA 805622 >seq99 Length=1752785 Score = 141 bits (156), Expect = 2e-28 Identities = 141/180 (78%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| |||||| || || | ||||| || | ||||| || ||||| || Sbjct 456626 TTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATC 456567 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | ||||||||||||||| || ||||||||||| || ||||| | ||||||| ||| Sbjct 456566 AGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 456507 Query 68394 ATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| ||| || || || || | |||||| || || |||||||||||||| ||||| Sbjct 456506 ATAGTGTC-GCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTAACGAA 456448 >seq62 Length=1271336 Score = 105 bits (116), Expect = 1e-17 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || || || || || | ||||| || | ||||| || || || || Sbjct 898283 TTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATC 898342 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| ||||| || || |||||||| || ||||| | ||||||| ||| Sbjct 898343 AATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 898402 Query 68394 ATGGTGTCTGCTG-ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || || || |||| | || || || | |||||||| || ||||| |||||||||||||| Sbjct 898403 ATCGTATC-GCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 898461 >seq65 Length=1630678 Score = 87.8 bits (96), Expect = 3e-12 Identities = 210/315 (67%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 59294 AAGCCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGC 59353 || || |||||||| || ||| ||| |||||||||||||| ||||| | ||||| Sbjct 382617 AAACCTGTGTGGACATCTTCGGAGAAACCAATCTCAGCAGTACCGCCAACTTCAACAAGT 382676 Query 59354 GCCTCTCGGCGGTAGACTGCGCATGTCCCGACGCACACGGCGCCGCCAAAGGTGTCGCGA 59413 || || || || || || ||| | || ||||| | | | | || | | | |||| Sbjct 382677 GCTTCGCGACGATAAACCGCGTTCGATCCAACGCAAATCGAGGCACCCCATCTATTGCGA 382736 Query 59414 GAAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAA 59473 || | | | || || ||||||||||| | || || | ||||||||||| Sbjct 382737 TTGACTTCCACAACTCGATAAAACAGTTCCTGAATACCGCCTGCTCCTTGCTCAACCCAA 382796 Query 59474 GTCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCA 59533 ||||| || || |||||| || || | || || || || |||| ||| Sbjct 382797 GTCTGATCATCCGTGACGCGGAAGAATTGTGGAGATTGAACGATAGCAGTCTTCGGATCA 382856 Query 59534 TGGGAAAAGTAG-GGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATC 59592 | || | || | || || | ||| | |||| ||||||| || |||||||| || || || Sbjct 382857 -GCGAGATGTTGAGGGATCAATTCGTAGAGGAAGTCAGGACGAGGACAGAAATCGGCGTC 382915 Query 59593 GAAGATGGCAAAGAA 59607 |||||||| |||||| Sbjct 382916 GAAGATGGTAAAGAA 382930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620038342600