Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq93 140 8e-28
seq99 122 2e-22
seq62 107 5e-18
>seq93
Length=1762202
Score = 140 bits (154), Expect = 8e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || ||||| | || |||||||| | ||| || || |||||||| ||||||| |
Sbjct 806109 CCTCCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAG 806050
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || ||||| ||||| | ||| || || ||||||||||| || ||||| |||
Sbjct 806049 AGGGTTCGTCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGAGGG 805990
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| || |||||||| |||| || ||||| || || | ||| ||||||||
Sbjct 805989 ATGCCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAGGATTCTACC 805930
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || ||||| ||||| || ||||| ||||||||
Sbjct 805929 TCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTGAC 805895
Score = 114 bits (126), Expect = 3e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || ||||| ||||| | || || | || || || ||||| || || ||||||
Sbjct 806301 TCCTTCTGAATATTGTAGTCTGACAGGGTTCTGCCATCCTCCAATTGCTTACCGGCGAAG 806242
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| ||||| || ||| |||||| || || ||||| || || |||| || |||||
Sbjct 806241 ATAAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCTTGAATCTTCGACTTAACGTTG 806182
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| ||||| || || || ||||| ||||| ||||||| |||||||||
Sbjct 806181 TCGATTGTGTCGGATGATTCAACCTCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACG 806122
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 806121 AAGATCTGCAT 806111
Score = 109 bits (120), Expect = 1e-18
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212
|||| ||||| || | |||||||| ||||| ||||| ||||| ||||||||| || |
Sbjct 1532231 TCGGCATGAACTCCAACCTCATGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTTG 1532290
Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAA 269272
|| || || | ||||| || ||||| || || || |||| ||| ||||| |
Sbjct 1532291 TTGCTCTTGGCAACGAGAAGGTCTACAAGTCAGCCAACCCATTCGACTTCATGGAGAACA 1532350
Query 269273 TTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTG 269332
| || || | |||||||| ||||||||||| |||||||| | ||||| ||| |||
Sbjct 1532351 TCTCACTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAAAAAGCTG 1532410
Query 269333 GTGTAATG 269340
|||| |||
Sbjct 1532411 GTGTCATG 1532418
Score = 102 bits (112), Expect = 2e-16
Identities = 140/192 (73%), Gaps = 8/192 (4%)
Strand=Plus/Minus
Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321
|| |||||||| | ||| ||||| ||||||||||| || | || ||||| ||||||
Sbjct 805811 AGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAAAGAGTGCGGCCGTCT 805752
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378
|| | || ||||| |||||||||| || ||||| || ||| || || || ||
Sbjct 805751 TCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTG---GTCGGGGGGAATGCCCTCCTTG 805695
Query 288379 TCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437
||||| || || ||| || || || || || | |||||| || || || ||||| |||||
Sbjct 805694 TCCTGAATCTT-GCTCTTTACATTATCGATGGTATCGCTGGACTCAACCTCGAGGGTGAT 805636
Query 288438 CGTCTTCCCGGT 288449
||||| || ||
Sbjct 805635 GGTCTTGCCAGT 805624
>seq99
Length=1752785
Score = 122 bits (134), Expect = 2e-22
Identities = 146/197 (74%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 288269 GATGAATC-GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327
|||| ||| || | | | |||||||| || || ||| || || || || || || | |
Sbjct 456644 GATGTATCTGTTCATACCTTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGT 456585
Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387
|| || || ||||||||||| || ||||| |||||||||||| || ||||||||
Sbjct 456584 TGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATC 456525
Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447
|| | || ||||| || |||| |||||||| || || ||||| ||||| ||||| ||
Sbjct 456524 TTGGACTTGACGTTGTCGATAGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCC 456465
Query 288448 GTCAGAGTCTTGACGAA 288464
|| || ||||| |||||
Sbjct 456464 GTGAGGGTCTTAACGAA 456448
>seq62
Length=1271336
Score = 107 bits (118), Expect = 5e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| || || || ||||| | || ||||| || || || | ||| ||||| || ||||||
Sbjct 898283 TTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATC 898342
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
| ||||| || ||||||||| || || |||||||| || | || ||||| ||
Sbjct 898343 AATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 898402
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | |||||| || || || || || ||||| ||||| || || || |||||||||||
Sbjct 898403 ATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 898461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179651301563990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |