Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq93 140 8e-28 seq99 122 2e-22 seq62 107 5e-18 >seq93 Length=1762202 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || |||||||| | ||| || || |||||||| ||||||| | Sbjct 806109 CCTCCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAG 806050 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | ||| || || ||||||||||| || ||||| ||| Sbjct 806049 AGGGTTCGTCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGAGGG 805990 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| |||| || ||||| || || | ||| |||||||| Sbjct 805989 ATGCCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAGGATTCTACC 805930 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || ||||| ||||| || ||||| |||||||| Sbjct 805929 TCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTGAC 805895 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| ||||| | || || | || || || ||||| || || |||||| Sbjct 806301 TCCTTCTGAATATTGTAGTCTGACAGGGTTCTGCCATCCTCCAATTGCTTACCGGCGAAG 806242 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || ||| |||||| || || ||||| || || |||| || ||||| Sbjct 806241 ATAAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCTTGAATCTTCGACTTAACGTTG 806182 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| || || || ||||| ||||| ||||||| ||||||||| Sbjct 806181 TCGATTGTGTCGGATGATTCAACCTCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACG 806122 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 806121 AAGATCTGCAT 806111 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||| ||||| || | |||||||| ||||| ||||| ||||| ||||||||| || | Sbjct 1532231 TCGGCATGAACTCCAACCTCATGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTTG 1532290 Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAA 269272 || || || | ||||| || ||||| || || || |||| ||| ||||| | Sbjct 1532291 TTGCTCTTGGCAACGAGAAGGTCTACAAGTCAGCCAACCCATTCGACTTCATGGAGAACA 1532350 Query 269273 TTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTG 269332 | || || | |||||||| ||||||||||| |||||||| | ||||| ||| ||| Sbjct 1532351 TCTCACTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAAAAAGCTG 1532410 Query 269333 GTGTAATG 269340 |||| ||| Sbjct 1532411 GTGTCATG 1532418 Score = 102 bits (112), Expect = 2e-16 Identities = 140/192 (73%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | ||| ||||| ||||||||||| || | || ||||| |||||| Sbjct 805811 AGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAAAGAGTGCGGCCGTCT 805752 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || ||||| |||||||||| || ||||| || ||| || || || || Sbjct 805751 TCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTG---GTCGGGGGGAATGCCCTCCTTG 805695 Query 288379 TCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||||| || || ||| || || || || || | |||||| || || || ||||| ||||| Sbjct 805694 TCCTGAATCTT-GCTCTTTACATTATCGATGGTATCGCTGGACTCAACCTCGAGGGTGAT 805636 Query 288438 CGTCTTCCCGGT 288449 ||||| || || Sbjct 805635 GGTCTTGCCAGT 805624 >seq99 Length=1752785 Score = 122 bits (134), Expect = 2e-22 Identities = 146/197 (74%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 288269 GATGAATC-GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 |||| ||| || | | | |||||||| || || ||| || || || || || || | | Sbjct 456644 GATGTATCTGTTCATACCTTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGT 456585 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || ||||||||||| || ||||| |||||||||||| || |||||||| Sbjct 456584 TGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATC 456525 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || | || ||||| || |||| |||||||| || || ||||| ||||| ||||| || Sbjct 456524 TTGGACTTGACGTTGTCGATAGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCC 456465 Query 288448 GTCAGAGTCTTGACGAA 288464 || || ||||| ||||| Sbjct 456464 GTGAGGGTCTTAACGAA 456448 >seq62 Length=1271336 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || || || ||||| | || ||||| || || || | ||| ||||| || |||||| Sbjct 898283 TTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATC 898342 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||| || ||||||||| || || |||||||| || | || ||||| || Sbjct 898343 AATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 898402 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | |||||| || || || || || ||||| ||||| || || || ||||||||||| Sbjct 898403 ATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 898461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651301563990