Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq93 109 6e-19 seq99 107 2e-18 seq62 98.7 1e-15 >seq93 Length=1762202 Score = 109 bits (120), Expect = 6e-19 Identities = 168/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032 |||||| |||| || | | ||| | ||||||||| | || |||||||||||| ||| Sbjct 806574 ATTTATTGACCACCACGGAGACGGAGCACCAAATGGAGAGTTGACTCCTTTTGAATGTTG 806515 Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092 || || || || || | || || | ||||||||||| || || | |||||||||| Sbjct 806514 TAGTCGCTCAAGGTACGACCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGG 806455 Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCT 42151 || | ||| | | |||||| ||| ||| | |||| |||| | | | ||||| Sbjct 806454 TCAGGTGGAATACCCTCCTTATCC-TGAATCTTTGACTTGACATTGTCAATGGTGTCTGA 806396 Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || | ||||| || ||||| || | ||||| |||||||| ||||| Sbjct 806395 CGACTCCACTTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 806339 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| |||| ||| |||||| ||||||||||| || | ||| || | | || || Sbjct 806319 ACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGGGTTCTGCCATCCTCC 806260 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||||| ||||| || || || ||||| |||| ||| | | |||||| | | || Sbjct 806259 AATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGGATACCCTCCTTAT-CTTG 806201 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | || | | | ||| | | | |||||| ||||| || || | |||||||| || Sbjct 806200 AATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACCTCAAGAGTGATGGTCTT 806141 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || ||||| ||||| Sbjct 806140 TCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111 >seq99 Length=1752785 Score = 107 bits (118), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 ||||||| || |||||||| ||| || || | || || || ||||| |||||||| | Sbjct 456628 CCTTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGA 456569 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || || || ||||||| ||| | | ||||||||| ||| || |||| ||| | Sbjct 456568 TCAGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 456510 Query 42139 CC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||||||||| ||||| |||| ||||| || |||||||| || ||||| || Sbjct 456509 TCGATAGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTAACG 456450 Query 42198 AAG 42200 ||| Sbjct 456449 AAG 456447 >seq62 Length=1271336 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| ||||| ||||| || | || || || | || || || ||||| ||||| || | Sbjct 898281 CCTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGA 898340 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | |||||||||||| | ||| | | |||||||||| ||| || |||| ||| | Sbjct 898341 TCAATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 898399 Query 42139 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||| ||||| || || || || | |||||||| |||||||| || ||||| || Sbjct 898400 TCGATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACG 898459 Query 42198 AAG 42200 ||| Sbjct 898460 AAG 898462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211408017200