Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq93 109 6e-19
seq99 107 2e-18
seq62 98.7 1e-15
>seq93
Length=1762202
Score = 109 bits (120), Expect = 6e-19
Identities = 168/237 (71%), Gaps = 2/237 (1%)
Strand=Plus/Minus
Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032
|||||| |||| || | | ||| | ||||||||| | || |||||||||||| |||
Sbjct 806574 ATTTATTGACCACCACGGAGACGGAGCACCAAATGGAGAGTTGACTCCTTTTGAATGTTG 806515
Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092
|| || || || || | || || | ||||||||||| || || | ||||||||||
Sbjct 806514 TAGTCGCTCAAGGTACGACCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGG 806455
Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCT 42151
|| | ||| | | |||||| ||| ||| | |||| |||| | | | |||||
Sbjct 806454 TCAGGTGGAATACCCTCCTTATCC-TGAATCTTTGACTTGACATTGTCAATGGTGTCTGA 806396
Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| ||||| || | ||||| || ||||| || | ||||| |||||||| |||||
Sbjct 806395 CGACTCCACTTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 806339
Score = 93.3 bits (102), Expect = 5e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| |||| ||| |||||| ||||||||||| || | ||| || | | || ||
Sbjct 806319 ACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGGGTTCTGCCATCCTCC 806260
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
| |||||||| ||||| || || || ||||| |||| ||| | | |||||| | | ||
Sbjct 806259 AATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGGATACCCTCCTTAT-CTTG 806201
Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
| | || | | | ||| | | | |||||| ||||| || || | |||||||| ||
Sbjct 806200 AATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACCTCAAGAGTGATGGTCTT 806141
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || | ||||| || ||||| |||||
Sbjct 806140 TCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111
>seq99
Length=1752785
Score = 107 bits (118), Expect = 2e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
||||||| || |||||||| ||| || || | || || || ||||| |||||||| |
Sbjct 456628 CCTTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGA 456569
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| || || || ||||||| ||| | | ||||||||| ||| || |||| ||| |
Sbjct 456568 TCAGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 456510
Query 42139 CC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | ||||||||||| ||||| |||| ||||| || |||||||| || ||||| ||
Sbjct 456509 TCGATAGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTAACG 456450
Query 42198 AAG 42200
|||
Sbjct 456449 AAG 456447
>seq62
Length=1271336
Score = 98.7 bits (108), Expect = 1e-15
Identities = 133/183 (73%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| ||||| ||||| || | || || || | || || || ||||| ||||| || |
Sbjct 898281 CCTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGA 898340
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| | |||||||||||| | ||| | | |||||||||| ||| || |||| ||| |
Sbjct 898341 TCAATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 898399
Query 42139 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | ||| ||||| || || || || | |||||||| |||||||| || ||||| ||
Sbjct 898400 TCGATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACG 898459
Query 42198 AAG 42200
|||
Sbjct 898460 AAG 898462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543211408017200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |