Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq124 183 4e-41 seq93 129 7e-25 seq160 93.3 5e-14 >seq124 Length=198120 Score = 183 bits (202), Expect = 4e-41 Identities = 1108/1747 (63%), Gaps = 49/1747 (3%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 |||||||| ||||| || ||||| | ||| ||||||| || | ||||| || Sbjct 125076 CGGAGGTAATACATGCCAGTCTTCAAGCCCAACTTCCAGCCAGCGAAGTGCATGCTGGTG 125135 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG-AA 115676 | |||| | ||| ||| || ||| || |||||| ||| |||||||||||| || Sbjct 125136 ATCTTGCCCATTGTGGGATCTTTCATATGGATGTTCATCGATTGAGATTGATCGATGTAA 125195 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTT 115734 || || || || || ||||| | | || ||| | ||| ||||| || || Sbjct 125196 GC-ACCACGGTCAGCGGCCATCTGGA--CGATTGTTCGTTGAGAGATCTCCCAGACGGTC 125252 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 ||||||| ||| || ||| ||||||| | || || |||||||| ||||| | Sbjct 125253 TTGTAGAGAGCCTTGATGTCAGCTGGGATGTTGGGAATGTTCTGGATAGAACCACCATCG 125312 Query 115795 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 || ||| | | |||||| | | ||||| ||||| || | |||||||| || | Sbjct 125313 GCGATGATGCGGTTCTTCATGTTGTCAGACCATAGACCCATATCGACGAGATCCTTCAGG 125372 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGT 115913 || ||||| || || ||||| || || || | ||| |||||||||| Sbjct 125373 AGCCATGGGTTGACGACCTGGAATTCACCAGCAAGAACACGAC-GAGAGTAGATGTTGGA 125431 Query 115914 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGAGGCTGTGGGCA 115972 ||||||||||| |||||||| ||| | || ||| || | || || ||| || |||| Sbjct 125432 TGTGTATGGCTCGAAGCACTCGTTG-AAGCCGAGAATTTGACTGGTACTGGCAGTTGGCA 125490 Query 115973 TGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGT 116032 |||| || | ||| | ||||||||| | ||| | | | || | | ||| | || | Sbjct 125491 TGGGAGCAACGAGCAAGCTGTTGCGAACACCGTGCTGCTTGATCTGCTGCTTCAAGGTAT 125550 Query 116033 CCCAGTCGTAGTTG-AGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGG 116091 ||||||| || | | | | | | | ||||||| ||| |||| || ||| | | Sbjct 125551 CCCAGTCCCAGAGGTCGGTAGGAGTGACAC-CCCACATGTCATACTGAAGCTCACCCTTG 125609 Query 116092 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT- 116150 || | || || || || ||||||| ||||| || | ||||| || | || | || Sbjct 125610 GAGACGGGTGAACCTTCGTATGTCTCGTATGGTCCGTGAACCTTGGCAAGCTC--AACTG 125667 Query 116151 -CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCT 116209 | ||| || ||||| || || ||||| || || | || | |||||||| Sbjct 125668 AAGAAGTGAGAGCGGCGTGGTAAATGGTCTCGAAGATCTGGATGTTGAGGTGCTTGGCCT 125727 Query 116210 CGTCGGAATCAAACGCGAGACGG-CACAAAATAAATACATCCGCGAGACCTTGGACACCG 116268 | || || || | || ||| | || ||| |||| || ||||||||||||||| Sbjct 125728 CAGGAGAGTCGAATGGAAGGCGGAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCG 125786 Query 116269 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAA 116325 | |||| || || || | | || ||| || ||| || || || | Sbjct 125787 ACAGCAATAGGTCGGTGACGGAAGTTGCTCTT---CTTGGCCTCGGGGACAGGGTAGTAG 125843 Query 116326 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 116385 || ||| || | | | || || || ||| |||||||| || ||| || ||||| Sbjct 125844 TTGACATCAATGATCTTGTTCAGGTTCTTGACGACAACCTGGCAGACTTCGTGGAGCTTC 125903 Query 116386 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 116445 | | || | | | | | ||||| || | || || || | || |||| Sbjct 125904 GCAAAGTCGTAGGTACCATCGTTGGTGTTGACGTAGGTGGGGAGAGCAAGGGAAGCCAAG 125963 Query 116446 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 116505 || || |||| | |||||| | || |||||| | ||| || || || | || || Sbjct 125964 TTGCAAACAGCGACCTCATCAGGAGCACAGTACTCCACAATCTCAGTGCAGAGGTTGGAG 126023 Query 116506 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGC 116565 || ||| ||||| | |||||| || || |||| | || || ||||||||||||||| Sbjct 126024 CTTCGAATTGTGCCGAGGTTCTTCTGGTTGCTCTTTCTATTGCAAGCATCCTTGTAGAGC 126083 Query 116566 ATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGC 116624 || |||| |||| ||||| || || | || | || | | ||| | || | | | Sbjct 126084 ATGAATGGATTCCCAGTCTCGGTCTGTGCCTCCAAGATGGAGTACCAAAGTTTCTGTGCC 126143 Query 116625 TGGCACAGTGGCGTTGGCTCGCCCCT--CCT----CCTCGTACTTTGTGTAGAGGGCCTC 116678 | | ||| ||| || |||| ||| ||||||||| ||| || ||||| Sbjct 126144 TTG----ATGGTCTTG---CGACCCTTGCCTTCACGCTCGTACTTCTCGTATAGAGCCTC 126196 Query 116679 AAACTCTTCACCCACAG-CCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACC 116737 ||||| ||| ||| || | || | | ||||| || | || || | | || || Sbjct 126197 GAACTCATCA-CCATAGACATCAGCCAAGCCTGGGCACTCGTTGGGGCACATCAAAGTCC 126255 Query 116738 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 116797 | | ||| || |||||| |||||||||||||| || |||||||| | || |||||| Sbjct 126256 ACTCTCCATTCTTCTCAACACGCTTCATGAAGAGATCAGGGATCCACAAGGCGTAGAAGA 126315 Query 116798 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 116857 |||| ||| || |||| || | || || || || | || | | || | || Sbjct 126316 GATCACGAGCTCGGACTTCCTCTTTGCCGTGGTTCTTTCGGAGATCAAGGTACTCGAAGA 126375 Query 116858 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGAC----GACCAGCC 116913 ||| |||||||| || || ||||| | |||| | | ||| | | ||| | Sbjct 126376 CATCTGCGTGCCATGGCTCGAGGTAGATGGCGAAAG-CACCTGGTCTCTTGTTGCCACCT 126434 Query 116914 TGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGAT 116973 |||| || || || || || ||| || || || ||||| |||| |||||| | || Sbjct 126435 TGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGTAGCATGGGAACGATACCGTTGGAG 126494 Query 116974 TGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATC-GTGGATGTGCATACC 117032 | || || || ||| ||| | | | || | || || ||| | | | ||| Sbjct 126495 TTTCCGTTCGTTCCCGCAATGTAGGCACCGGTAGCAC-GAATTCGGTGAACATTGAGACC 126553 Query 117033 AATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATC 117092 || || || || ||| ||||| ||||| | | | | ||||||| || || Sbjct 126554 GATTCCACCAGCATTCTTGGAGATCATGGCGCAAGTCTTCAATGTATCGTAGATACCGTC 126613 Query 117093 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACC 117152 || || | || | |||| |||||||| || | ||||| ||||||||| Sbjct 126614 AATGCTATCCTCTTTCATGTCGATAAGGAAGCATGAAGAGAGTTGTGCTTGTGGTGTACC 126673 Query 117153 AGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA-CATACCTTGGGACATCTTATCGTAGG 117211 ||| ||| | ||||| | || ||| |||| || | ||||||||| | ||| | Sbjct 126674 GGCGGCGAATAAAGTTGGGGAAGCATGGGTGAAGCACTTC-TGGGACATCAAGTTGTATG 126732 Query 117212 TCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGT 117271 |||| | | ||| ||| ||||| ||||||||||| | | || ||||||| ||| | Sbjct 126733 TCTCGATGGCAGCCTCAATATCTTCACCGTGAATACCAACAGCCACTCGCATAATCATAT 126792 Query 117272 ATTGGGG 117278 ||| || Sbjct 126793 GTTGTGG 126799 >seq93 Length=1762202 Score = 129 bits (142), Expect = 7e-25 Identities = 303/455 (67%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || ||||||||||||||||| ||||| || | || ||| |||||||| Sbjct 1532400 GTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGTGAGATGTTCTCCAT 1532341 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || |||||||| ||| || | | | |||| || | | ||| Sbjct 1532340 GAAGTCGAATGGGTTGGCTGACTTGTAGACCTTCTCGTTGCCAAGAGCAACA-----AGG 1532286 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 |||||||| | ||| |||| ||||| | ||| | |||||||| |||| ||| Sbjct 1532285 AGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCGAGGAGT 1532226 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || || || || || | |||| ||| |||||| || ||||| || | || | Sbjct 1532225 GCGCAAGGAAGAGCCTCGGTCAAGAACTCCTGCTCAATCTCAACAGCCTCGGTAATGACG 1532166 Query 127466 GCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAA 127524 | || | | | | | || | | || | || | |||||| |||||| Sbjct 1532165 TCTTGGACGGCTTGCTTGCTTGGGCGGT-GCTTCAAATGAGAGAAGAGAAGGCAAGCAAA 1532107 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| |||||||||||||| ||||| ||||| || ||||| |||||| | ||| Sbjct 1532106 GTCGGTGTGAAGACCCTCGTCACGAGAGATAAGTTCGTTAGAGAAAGTCAGACCAGCCAT 1532047 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 |||||| |||||||| |||||||| || | || || ||| ||||||||| ||||| Sbjct 1532046 GAGACCACGCTTCTTTAACCAGAAGATAGATGCGAACGATCCACTGAAGAAGATACCCTC 1531987 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||| ||||| || | ||||| | ||||||| Sbjct 1531986 GACAGCGGCGAATGCGACGAGACGTTGAGCAAAGG 1531952 >seq160 Length=1564179 Score = 93.3 bits (102), Expect = 5e-14 Identities = 219/324 (68%), Gaps = 10/324 (3%) Strand=Plus/Minus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCG 12848 ||||||||||||||| ||||||| || || | || ||| | |||||| || | | Sbjct 1276134 GAAGCCATCCATCTCCGTCAAGATCTGGTTAAGCGTAGCTTCTCTTTCATCGTTGCCACC 1276075 Query 12849 GGCATACCACCCGCACTG----CGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAAC 12904 | || | | || || || ||| || | || |||||||| |||||||| | Sbjct 1276074 GCCAAATGAACCTGCCTTTCCACGAGCCTTTCCAATTGCATCAATTTCATCAATGAAGAT 1276015 Query 12905 GATACACGGT-TGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGA 12963 |||||| || || | ||| | || | | |||| |||||| |||| ||||| | Sbjct 1276014 GATACATGGGGTGTTCTTC-CTTGCCATAGCGAAGAGATCTCGTACTCGGGAAGCACCAA 1275956 Query 12964 CACCCACAAACATCTCCACAAAATTGGCGGCG-GAACATTGGATGAAGGGGACGTTGGAT 13022 |||| |||||||||||||| || | || | || ||| | || |||||| || | |||| Sbjct 1275955 CACCAACAAACATCTCCACGAACTCGGAGCCGCTGACACT-GAAGAAGGGTACTTGGGAT 1275897 Query 13023 TCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGG 13082 || || || ||||| || | | || || ||||| ||||| || | |||| Sbjct 1275896 TCGCCAGCAGTGGCTTTCGCCAACAACGTTTTACCCGTTCCTGGAGGTCCGGAAAGAATA 1275837 Query 13083 GCACCACGTGGGATCCTGGCACCA 13106 ||||| ||||| ||| | |||||| Sbjct 1275836 GCACCTCGTGGTATCTTAGCACCA 1275813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505627887800