Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq93 125 8e-24
seq99 116 4e-21
seq62 107 2e-18
>seq93
Length=1762202
Score = 125 bits (138), Expect = 8e-24
Identities = 139/183 (76%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||||||||||||||| || || || | || ||||| |||||||| |||||
Sbjct 806074 CTCCTTCTGGATATTGTAGTCGGAGAGGGTTCGTCCATCTTCGAGTTGCTTGCCAGCGAA 806015
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||| || ||||||| || | || ||||||||| ||||||| ||| | |||
Sbjct 806014 GATCAGGCGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTCGACTT-AACGT 805956
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| ||||| || |||| |||||||| || || ||||| || || |
Sbjct 805955 TGTCGATGGTGTCGGAGGATTCTACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTGA 805896
Query 46581 CAA 46583
|||
Sbjct 805895 CAA 805893
Score = 93.3 bits (102), Expect = 5e-14
Identities = 161/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419
||||| || || | | ||| | ||||| ||| | || ||||||||| || |||||
Sbjct 806572 TTATTGACCACCACGGAGACGGAGCACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTA 806513
Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479
|||| | || || | || || | ||||| || || || ||||| |||||||||||
Sbjct 806512 GTCGCTCAAGGTACGACCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTC 806453
Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539
| || | | |||||| ||| ||||| ||||| | | | ||||| |||
Sbjct 806452 AGGTGGAATACCCTCCTTATCCTGAATCTTTGACTTGACATTGTCAATGGTGTCTGACGA 806393
Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| |||| ||||| || ||||| |||| || || |||||||| |||||
Sbjct 806392 CTCCACTTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 806339
>seq99
Length=1752785
Score = 116 bits (128), Expect = 4e-21
Identities = 137/183 (75%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||||||||| ||||| ||| || || || | || ||||| |||||||| ||||| |
Sbjct 456628 CCTTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGA 456569
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| ||| || ||||||| || | | ||||||||| |||||| ||||| ||| |
Sbjct 456568 TCAGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 456510
Query 46524 CC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||||||||| ||||| || | ||||| || |||||||| || || |||||
Sbjct 456509 TCGATAGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTAACG 456450
Query 46583 AAG 46585
|||
Sbjct 456449 AAG 456447
>seq62
Length=1271336
Score = 107 bits (118), Expect = 2e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| || || |||||||| || || ||||| | || || || ||||| || || || |
Sbjct 898281 CCTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGA 898340
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| ||||||||||| | || | | |||||||||| |||||| ||||| ||| |
Sbjct 898341 TCAATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 898399
Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||| ||||| || || || || | |||||||| |||||||| || || || ||
Sbjct 898400 TCGATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACG 898459
Query 46583 AAG 46585
|||
Sbjct 898460 AAG 898462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565236951576600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |