Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq93 140 3e-28
seq99 105 7e-18
>seq93
Length=1762202
Score = 140 bits (154), Expect = 3e-28
Identities = 197/276 (71%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| |||||||||||| || ||| | || || || | ||||||||| ||| || ||
Sbjct 1531793 GTATGTGTCGATGAGGAGAGAGTACGTCTCGGAATGAATGTTCTCCATCATGATCTGGAA 1531734
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| ||||| || |||||| | ||| ||||| | || |||||||| || ||
Sbjct 1531733 GCCGTAGAAGCAGCGAGCCTCGGGGATCTGAACTTCACCACTAAAGCGCTCGACAAGGTT 1531674
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
||||||||||| || || |||||||| || || || ||||| |||||| | ||
Sbjct 1531673 CTCGTTGACGATTCCATCTGAAGCGGCGAAGAATGCAAGAACGTGTGAGATGAAGTAACG 1531614
Query 133347 CTCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | ||| || | | | ||||||| | ||||| ||||| || | ||| ||
Sbjct 1531613 CTCATCGTCATTGAGCTTGTTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCTTC 1531554
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||||||| || || |||||||| || ||||||||
Sbjct 1531553 TGCGGTCCAGAAAGATGCCTCGGCCTTCTTGTACAT 1531518
Score = 113 bits (124), Expect = 5e-20
Identities = 348/530 (66%), Gaps = 10/530 (2%)
Strand=Plus/Minus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| |||||| || || || || ||||| || || || || ||||| |
Sbjct 1532418 CATGACACCAGCTTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGC 1532359
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707
| || ||| | ||| || || || |||||||||| |||||| ||| | ||||
Sbjct 1532358 AAGTGAGATGTTCTCCATGAAGTCGAATGGGTTGGCTGACTTGTAGACCTTCTCGTTGCC 1532299
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767
| || | || || || | || || |||||||||||||||||| |||| | | |
Sbjct 1532298 AAG-AG--CAACAAGGAGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGA 1532242
Query 132768 ATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
|| | || || || |||| || || || ||||| | || ||||| || | |
Sbjct 1532241 GTTCATGCCGAGGAGTGCGCAA-GGAAGAGCCTCGGTCAAGAACTCCTGCTCAATCTCAA 1532183
Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886
| || ||||| | || || ||| | ||| || || ||| |||||| ||
Sbjct 1532182 CAGCCTCGGTAATGACGTCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAATGAGAGA 1532123
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
| | | ||||||||||||| || | |||||||| | || || |||||||| ||
Sbjct 1532122 AGAGAAGGCAAGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATAAGTTCGTTAGAGA 1532063
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
|||||| || | |||||| || || || || | ||| || || | ||||| ||
Sbjct 1532062 AAGTCAGACCAGCCATGAGACCACGCTTCTTTAACCAGAAGATAGATGCGAACGATCCAC 1532003
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT-GGCTTCT 133065
||||||| |||||||| || ||||| || || || || | | || || | |||
Sbjct 1532002 TGAAGAAGATACCCTCGACAGCGGCGAATGCGACGAGACGTTGAGCAAAGGTAGAGCTCT 1531943
Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115
| || | |||||| | | ||||| |||||||| | |||| ||| ||
Sbjct 1531942 TGTCTTG-GATCCATCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 1531894
>seq99
Length=1752785
Score = 105 bits (116), Expect = 7e-18
Identities = 134/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || ||||||||||| || |||||| |||| || ||| | | ||||| |
Sbjct 456448 TTCGTTAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGCGACACTATC 456507
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || || |||| ||||| || ||||| || |||||||||| || ||
Sbjct 456508 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAACAACGCCT 456566
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | ||| ||||| || || || || | || ||||| | ||| ||||||||||||||
Sbjct 456567 GATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGAGCGATTACAACATCCAAAA 456626
Query 38432 GG 38433
||
Sbjct 456627 GG 456628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500171518307200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |