Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq124 214 2e-50 seq93 102 1e-16 seq160 100 3e-16 >seq124 Length=198120 Score = 214 bits (236), Expect = 2e-50 Identities = 1016/1585 (64%), Gaps = 47/1585 (3%) Strand=Plus/Plus Query 105751 GATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTG 105810 ||| ||||| || || ||||||| |||||| ||| ||||||| | | || || || Sbjct 125237 GATCTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGGATGTTGGGAATGTTCTG 125296 Query 105811 AATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTT 105870 || ||||| || | || ||| | | |||||| | | ||||| ||||| || | Sbjct 125297 GATAGAACCACCATCGGCGATGATGCGGTTCTTCATGTTGTCAGACCATAGACCCATATC 125356 Query 105871 CTTGAGATCATTGACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTT 105928 |||||| || | ||| ||| |||||| | | || || || || || | Sbjct 125357 GACGAGATCCTTCAGGAGCCATGG--GTTGACGACCTGGAATTCACCAGCAAGAACACGA 125414 Query 105929 CTCAGA-TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGC 105987 | ||| |||||||| | ||||| || || ||||| || || || | ||||| Sbjct 125415 CG-AGAGTAGATGTTGGATGTGTATGGCTCGAAGCACTCGTTGAAGCCGAGAATTTGACT 125473 Query 105988 GGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGAT 106047 ||| ||| |||||||| || || | | | ||||| |||| ||| | | |||||| Sbjct 125474 GGTACTGGCAGTTGGCATGGGAGCAACGAGCAAGCTGTTGCGAACACCGTGCTGCTTGAT 125533 Query 106048 GCGTTCCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAA 106106 | | ||| | ||||||||| || | | | || | || ||||||| ||| Sbjct 125534 CTGCTGCTTCAAGGTATCCCAGTCCCAGAGGTCGGTAGGAGTGACAC-CCCACATGTCAT 125592 Query 106107 ATTGAAGCAC-CCCTTGG-GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGC 106164 | |||||| | ||||||| |||| || ||||| || ||||||| || | || || | Sbjct 125593 ACTGAAGCTCACCCTTGGAGACG--GGTGAACCTTCGTATGTCTCGTATGGTCCGTGAAC 125650 Query 106165 TTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGC 106224 | || | ||| | || | ||||| || ||||| || ||||| | Sbjct 125651 CTTGGCAAGCTCAACTGAAGAAGTGAGAGCGGCGTGGTAAATGGTCTCGAAGATCTGGAT 125710 Query 106225 ATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGC-ACAAAATAAATACATCCG 106283 || | | |||||| ||| || || |||| |||| | || ||| |||| | Sbjct 125711 GTTGAGGTGCTTGGCCTCAGGAGAGTCGAATGGAAGGCGGAGAGCCAAGAAAG-CATCAG 125769 Query 106284 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 106343 | |||||||| ||||| | | ||||||||| ||| || | || ||| || || Sbjct 125770 CAAGACCTTGGACACCGACAGCAATAGGTCGGTGACGGAAGTTGCTCTTCTTGGC---CT 125826 Query 106344 CA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG 106400 | || || || | || ||||||| ||| || || ||| |||| || Sbjct 125827 CGGGGACAGGGTAGTAGTTGACATCAATGATCTTGTTCAGGTTCTTGACGACAACCTGGC 125886 Query 106401 TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAA 106460 || ||| || || || || | || | || | | | ||||| || | || | Sbjct 125887 AGACTTCGTGGAGCTTCGCAAAGTCGTAGGTACCATCGTTGGTGTTGACGTAGGTGGGGA 125946 Query 106461 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 106520 | || | || ||||| ||||||||||| |||||| | | |||||| | ||| | Sbjct 125947 GAGCAAGGGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCACAGTACTCCACAATCT 126006 Query 106521 CTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGC 106580 | || || | |||||| || ||| || || | ||||| ||||| |||||| | |||| Sbjct 126007 CAGTGCAGAGGTTGGAGCTTCGAATTGTGCCGAGGTTCTTCTGGTTGCTCTTTCTATTGC 126066 Query 106581 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCT 106640 | |||||||||||||||||| | || |||| ||||| ||||||| || | || | | Sbjct 126067 AAGCATCCTTGTAGAGCATGAATGGATTCCCAGTCTCGGTCTGTGCCTCCAAGATGGAGT 126126 Query 106641 TCCACA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCTCCGC-CTCGTACTTT 106696 ||| | || | | || | |||| || | ||| | ||| | | ||||||||| Sbjct 126127 ACCAAAGTTTCTGTGCCTTG----ATGGTCTTGCGACCCTTGCCTTCACGCTCGTACTTC 126182 Query 106697 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA 106756 ||| || || || ||||| ||||| | || | | ||||| || || || Sbjct 126183 TCGTATAGAGCCTCGAACTCATCACCATAGACATCAGCCAAGCCTGGGCACTCGTTGGGG 126242 Query 106757 CAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 106816 || | | || ||| | ||| || |||||| ||||||||||| || || || |||||| Sbjct 126243 CACATCAAAGTCCACTCTCCATTCTTCTCAACACGCTTCATGAAGAGATCAGGGATCCAC 126302 Query 106817 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 106876 | || | |||||||| | | || | || || | || ||||| ||| | ||| Sbjct 126303 AAGGCGTAGAAGAGATCACGAGCTCGGACTTCCTCTTTGCCGTGGTTCTTTCGGAGATCA 126362 Query 106877 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTT 106932 ||| |||| | || ||| |||||||||||||| || |||| |||| || || || Sbjct 126363 AGGTACTCGAAGACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGTCTC 126422 Query 106933 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992 | | | ||| |||| | || || | || ||| ||| || || || ||||| |||| Sbjct 126423 TTGTTG-CCACCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGTAGCATGGGAAC 126481 Query 106993 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 107052 ||||| | || | || || || ||| ||| | | || | ||| | Sbjct 126482 GATACCGTTGGAGTTTCCGTTCGTTCCCGCAAT---GTAGGCACCGG-TAGCACGAATTC 126537 Query 107053 GATGTGCAT----CCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAG 107106 | || ||| || || || ||||| ||| ||||| | ||||| | | | | | Sbjct 126538 GGTGAACATTGAGACCGATTCCACCAGCATTCTTGGAGATCATGGCGCA-AGT-CTTCAA 126595 Query 107107 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 107166 || | |||||||||| || ||||| || || ||||||||||||| || | Sbjct 126596 TGTATCGTAGATACCGTCAATGCTATCCTCTTTCATGTCGATAAGGAAGCATGAAGAGAG 126655 Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTT 107225 || | | ||||||||| || ||| | ||||| | || || |||| || | | Sbjct 126656 TTGTGCTTGTGGTGTACCGGCGGCGAATAAAGTTGGGGAAGCATGGGTGAAGCACTTC-T 126714 Query 107226 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285 |||||||| || ||||||||| | | ||| ||||| ||||| ||||| || || | | Sbjct 126715 GGGACATCAAGTTGTATGTCTCGATGGCAGCCTCAATATCTTCACCGTGAATACCAACAG 126774 Query 107286 CCACACGCATAAACATGTATTGGGG 107310 |||| ||||||| ||| | ||| || Sbjct 126775 CCACTCGCATAATCATATGTTGTGG 126799 >seq93 Length=1762202 Score = 102 bits (112), Expect = 1e-16 Identities = 277/423 (65%), Gaps = 12/423 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| ||||| |||||||| |||||||||||||| || |||| ||||| ||||| Sbjct 1532399 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGTGAGATGTTCTCCATG 1532340 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 117099 ||||| ||||| || | || | | | | || || |||| ||| Sbjct 1532339 AAGTCGAATGGGTTGGCTGACTTGTAGACCTTCTCGTTGCCAAGAGCAACA------AGG 1532286 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 |||||||| | || |||| ||||| | ||| | |||||||| |||| ||| Sbjct 1532285 AGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCGAGGAGT 1532226 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 || || || || || | |||| | | |||||||||||| ||||| | | || | Sbjct 1532225 GCGCAAGGAAGAGCCTCGGTCAAGAACTCCTGCTCAATCTCAACAGCCTCGGTAATGACG 1532166 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | |||| | || | | || | | |||| |||||| ||||| Sbjct 1532165 TCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAATGAGAGAAGAGAAGGCAAGCAAAG 1532106 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 || ||| |||||||| || || || |||||||| || ||||| || || | |||| Sbjct 1532105 TCGGTGTGAAGACCCTCGTCACGAGAGATAAGTTCGTTAGAGAAAGTCAGACCAGCCATG 1532046 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 ||||| |||||||| ||||| | |||| ||| || || ||||||||||||||| Sbjct 1532045 AGACCACGCTTCTTTAACCAGAAGATAGATGCGAACGATCCACTGAAGAAGATACCCTCG 1531986 Query 117400 ACA 117402 ||| Sbjct 1531985 ACA 1531983 >seq160 Length=1564179 Score = 100 bits (110), Expect = 3e-16 Identities = 221/323 (68%), Gaps = 10/323 (3%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9339 || ||||||||||| ||||| | ||||||| || ||| | |||||| || | | | Sbjct 1276133 AAGCCATCCATCTCCGTCAAGATCTGGTTAAGCGTAGCTTCTCTTTCATCGTTGCCACCG 1276074 Query 9340 GCATACCA-CCAGCACTGCGTTG---CTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 || | | || || | | | |||||| | |||||||| ||||||||||||| Sbjct 1276073 CCAAATGAACCTGCCTTTCCACGAGCCTTTCCAATTGCATCAATTTCATCAATGAAGATG 1276014 Query 9396 ATACATGGT-TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 |||||||| || | ||| | || || | |||||||| || || | || || || Sbjct 1276013 ATACATGGGGTGTTCTTC-CTTGCCATAGCGAAGAGATCTCGTACTCGGGAAGCACCAAC 1275955 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGATT 9513 |||||||||||||||||| || | | | || ||| | || |||||| || | |||| Sbjct 1275954 ACCAACAAACATCTCCACGAACTCGGAGCCGCTGACACT-GAAGAAGGGTACTTGGGATT 1275896 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9573 | || ||| ||||| || | | || |||||||| ||||| || | || | | Sbjct 1275895 CGCCAGCAGTGGCTTTCGCCAACAACGTTTTACCCGTTCCTGGAGGTCCGGAAAGAATAG 1275836 Query 9574 CACCCCGTGGAATCTTGGCGCCA 9596 |||| ||||| ||||| || ||| Sbjct 1275835 CACCTCGTGGTATCTTAGCACCA 1275813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979288174200