Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq93 152 1e-31 seq99 109 1e-18 >seq93 Length=1762202 Score = 152 bits (168), Expect = 1e-31 Identities = 146/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || |||||||| |||| || |||| ||||||||| Sbjct 806091 ACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTTCGTCCATCTTCG 806032 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| || ||||||||||| ||||| |||||||| ||||| || Sbjct 806031 AGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGG 805972 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || |||||||| || ||| || || ||||| | |||||| Sbjct 805971 ATCTTCGACTTAACGTTGTCGATGGTGTCGGAGGATTCTACCTCCAGGGTGATGGTCTTT 805912 Query 195112 CCTGTCA 195118 || |||| Sbjct 805911 CCAGTCA 805905 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || ||||||||||| || | || ||||| ||||| || | || Sbjct 806314 GTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGGGTTCTGCCATCCTCCAATTG 806255 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||||||||| ||||| || || || || || || || || |||||||| || Sbjct 806254 CTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCTTGAATCTT 806195 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || || ||||| || ||| || ||||| || | |||||||| || Sbjct 806194 CGACTTAACGTTGTCGATTGTGTCGGATGATTCAACCTCAAGAGTGATGGTCTTTCCGGT 806135 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 806134 CAAGGTCTTGACGAAGATCTGCAT 806111 Score = 127 bits (140), Expect = 5e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 || ||||| ||||| |||||||| ||||| ||| |||| || | ||||| || | || Sbjct 806541 TGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTCAAG-GTACGACCATCCTCCAATTG 806483 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| | ||| || ||||| || ||||| || || || || ||||| || Sbjct 806482 CTTACCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATACCCTCCTTATCCTGAATCTT 806423 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| || ||||||||||| || |||||||| | || | ||||| || || Sbjct 806422 TGACTTGACATTGTCAATGGTGTCTGACGACTCCACTTCCAATGTGATTGTCTTGCCAGT 806363 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || || || | ||||| Sbjct 806362 CAAAGTCTTGACAAAGATCTGCAT 806339 Score = 125 bits (138), Expect = 2e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||||||||||| || ||||| ||||| | |||||| | || ||||| Sbjct 805808 ACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAAAGAGTGCGGCCGTCTTCA 805749 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | ||||||||||| || |||||||| || ||||| ||| Sbjct 805748 AGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 805689 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| || || || ||||| || Sbjct 805688 ATCTTGCTCTTTACATTATCGATGGTATC 805660 >seq99 Length=1752785 Score = 109 bits (120), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| || ||||||||| || || | ||||| ||||| ||||| || |||||||| Sbjct 456626 TTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATC 456567 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || ||||||||||| || || || ||||| ||||| || || || ||||||||| || Sbjct 456566 AGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 456507 Query 195073 ATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 || ||||| ||| ||||| || ||||| | ||||| || || | || || ||| Sbjct 456506 ATAGTGTCGCTCGA---CTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTAACG 456450 Query 195130 AA 195131 || Sbjct 456449 AA 456448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109478685877235