Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq62 100 2e-16 seq93 86.0 4e-12 >seq62 Length=1271336 Score = 100 bits (110), Expect = 2e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||||||||| |||||||||||| | || |||| || || || ||||| ||||| || Sbjct 898283 TTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATC 898342 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | ||| |||||||| | || | ||||||||||| ||||| |||||| | Sbjct 898343 AATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 898402 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 |||| || | || ||| || || | || ||||| || ||||| || ||||| || ||| Sbjct 898403 ATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAG 898462 >seq93 Length=1762202 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || |||||||| || ||||| || ||| ||| |||| ||| Sbjct 806319 ACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGGGTTCTGCCATCCTCC 806260 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || ||||| || || || |||||||| || | || | |||||||| || | Sbjct 806259 AATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCTTGA 806200 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | || | || | ||||| || | || ||||| ||| Sbjct 806199 ATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACCTCAAGAGTGATGGTCTTT 806140 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||| || |||||||||||| Sbjct 806139 CCGGTCAAGGTCTTGACGAAGATCTGCATA 806110 Score = 84.2 bits (92), Expect = 1e-11 Identities = 126/174 (72%), Gaps = 10/174 (6%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || ||||| |||||||| | || | || || ||||| ||||| || || Sbjct 805790 TCTTTCTGGATATTATAATCCGAAAGAGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAG 805731 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT-CTGTTTGACGGA 34909 || | ||||| ||||| | || | ||||||||||| |||||| || ||| || | Sbjct 805730 ATCAAGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTT-AC--A 805674 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGA 34959 | ||||||| || | || |||||| |||| ||| ||||| || || |||| Sbjct 805673 T--TATCGATGGTATCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGA 805622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632788923240