Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq124 152 1e-31 seq93 131 3e-25 >seq124 Length=198120 Score = 152 bits (168), Expect = 1e-31 Identities = 400/604 (66%), Gaps = 25/604 (4%) Strand=Plus/Plus Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 ||||| || ||||||||| || || || || |||| || || || ||| | | Sbjct 126003 ATCTCAGTGCAGAGGTTGGAGCTTCGAATTGTGCCGAGGTTCTTCTGGTTGCTCTTTCTA 126062 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||| ||| |||||||||||||| || ||| |||||||| ||| ||| ||| || Sbjct 126063 TTGCAAGCATCCTTGTAGAGCATGAATGGATTCCCAGTCTCGGTCTGTGCCTCCAAGATG 126122 Query 221879 TTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTT 221931 || ||| |||| |||| || | | ||| | |||| || ||| |||| ||| Sbjct 126123 GAGTACCAAAGTT-TCTGTGCCTTGATGGTCTTGCGACCCTTGCCTTCACGCTCGTACTT 126181 Query 221932 TTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACA 221991 || ||||||||| | | |||| ||||| || | || ||| |||||| || Sbjct 126182 CTC-------GTATAGAGCCT--CGAACTCATCACCATAGACATCAGCCAAGCCTGGGCA 126232 Query 221992 CCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTC 222051 | | ||| ||||||| | |||| | || | | || | || ||||||||| || Sbjct 126233 CTCGTTGGGGCACATCAAAGTCCACTCTCCATTCTTCTCAACACGCTTCATGAAGAGATC 126292 Query 222052 CGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTT 222111 |||||||||| || | |||||||| | | || ||||| ||||| ||| || Sbjct 126293 AGGGATCCACAAGGCGTAGAAGAGATCACGAGCTCGGACTTCCTCTTTGCCGTGGTTCTT 126352 Query 222112 CCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGC 222171 | ||||| | |||| || | || |||||||| ||||| || |||| ||| | ||| Sbjct 126353 TCGGAGATCAAGGTACTCGAAGACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAAAGC 126412 Query 222172 GCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAA 222230 || |||| |||||||||||| || || || || ||| | |||||||| || | Sbjct 126413 ACCTGGTCTCTTGTTGCCACCTTGGTCGACGTATCT-GGCAGTGTTGTTGAAGACACGTA 126471 Query 222231 GGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC 222290 | | || || | |||||||| ||||| || ||| |||||| |||||| || | Sbjct 126472 GCATGGGAACGATACCGTTGGAGTTTCCGTTCGTTCCCGCAATGTAGGCACCGGTAGCAC 126531 Query 222291 ---TCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGC 222347 | ||| | || | ||||| ||||| || | || |||||||||||||| Sbjct 126532 GAATTCGGTGA---ACATTGAGACCGATTCCACCAGCATTCTTGGAGATCATGGCGCAAG 126588 Query 222348 TCTT 222351 |||| Sbjct 126589 TCTT 126592 >seq93 Length=1762202 Score = 131 bits (144), Expect = 3e-25 Identities = 338/513 (66%), Gaps = 11/513 (2%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTG 25873 ||||||||| |||||| ||||| | | |||||| | | ||||| |||| |||| Sbjct 1531898 GCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATCCAAGACAAGAGCTCTACCTTTG 1531957 Query 25874 GCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933 | || || || || || || ||||| ||||| ||||| ||||| || ||||| || Sbjct 1531958 CTCAACGTCTCGTCGCATTCGCCGCTGTCGAGGGTATCTTCTTCAGTGGATCGTTCGCAT 1532017 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTC 25992 | ||||||||| | ||| || || |||| | || ||| ||||| || ||||| || Sbjct 1532018 CTATCTTCTGGTTAAAGAAGCGTGGTCTCATGGCTGGTCTG-ACTTTCTCTAACGAACTT 1532076 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| | ||||||||||| |||| || ||||| ||||| |||| | | || ||| Sbjct 1532077 ATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCTTGCCTTCTCTTCTC---TCATTTG 1532133 Query 26053 CTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGA 26111 ||| || |||| | ||||| | |||| | |||||||| ||||| || Sbjct 1532134 AAGCAC-CGCCCAAGCAAGCAAGCCGTCCAAGACGTCATTACCGAGGCTGTTGAGATTGA 1532192 Query 26112 GAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCAT 26171 | ||||||| | ||||||||| || ||||| Sbjct 1532193 GCAGGAGTTCTTGACCGAGGCTCTTCCTTGCGCACTCCTCGGCATGAACTCCAACCTCAT 1532252 Query 26172 GAGCCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGAC 26230 || |||||||| |||| || || || | ||| | ||| | || || || | Sbjct 1532253 GAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTTGTTGC-TCTTGGCAACGAGAAGG 1532311 Query 26231 TCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 ||||| ||| ||| ||||| |||||||| ||||| ||||| || | | || |||||| Sbjct 1532312 TCTACAAGTCAGCC-AACCCATTCGACTTCATGGAGAACATCTCACTTGCCGGAAAGACC 1532370 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 |||||||| || ||| | || || ||||| ||| Sbjct 1532371 AACTTCTTCGAGAAGCGTGTTGGTGACTACCAA 1532403 Score = 93.3 bits (102), Expect = 8e-14 Identities = 164/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || ||||||||| ||||||||||||||| Sbjct 1531509 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAAGAGATTGATCTG 1531568 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACGAGCAGCATT--TTC-TCAA 25592 | ||||| | ||| |||| || | | | ||| ||||| ||| || ||| || Sbjct 1531569 TCGAAGGATCTCCACGACTGGAAC-AACAAGCTCAATGACGATGAGCGTTACTTCATCTC 1531627 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | |||||||| || || || ||||| || || |||||||| || |||| | Sbjct 1531628 ACACGTTCTTGCATTCTTCGCCGCTTCAGATGGAATCGTCAACGAGAACCTTGTCGAGCG 1531687 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || | | ||||| ||| | ||||| || |||||||| |||||||| Sbjct 1531688 CTTTAGTGGTGAAGTTCAGATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGAT 1531741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842419835200