Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq93 132 3e-25 seq67 95.1 8e-14 >seq93 Length=1762202 Score = 132 bits (146), Expect = 3e-25 Identities = 361/551 (66%), Gaps = 4/551 (1%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || ||||| ||| | ||||| || ||| || || | | | | | ||| | Sbjct 595940 TGCGATAGGTATCGATCTCGGAACCACATACTCCTGCGTGGGTATCTTCAGAGATGACAG 595999 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 | | ||||| |||||||| |||||||| || |||| || || || | || | || || Sbjct 596000 AATCGAAATCATTGCCAACGACCAAGGCAACCGAACTACCCCCTCCTTCGTCGCCTTCAC 596059 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || || || | ||| || |||||||| || || | |||| || || || || Sbjct 596060 CGACACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCACAGAA 596119 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || | || ||||| || | ||||| || || || || | ||| | ||||| | Sbjct 596120 CACAGTCTTCGATGCGAAGCGTTTGATCGGACGCAAGTTCGCAGATGCTGAGGTCCAGGC 596179 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 ||||||| || | || || | || || || |||||| || ||| || || | Sbjct 596180 TGATATGAAGCACTTCCCCTTCACCGTCATTGATCGTGGTGGAAAGCCAGTCATTGAGGT 596239 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | | || | ||||| | || ||||| |||| || |||| ||||||||||| || Sbjct 596240 TGAGTTCAAG--GGTGAGAAGAAGCAATTCACACCTGAGGAAATCTCTTCAATGGTCTTG 596297 Query 474686 GCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 | || ||| | || ||| |||| ||||| | || | | || || | Sbjct 596298 GTTAAGATGCGCGAGACTGCGGAGGCATACCTTGGTGGAACTGTCAACAACGCTGTCGTC 596357 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || ||||| || || | ||||| ||||||||||| || || ||||| || |||| Sbjct 596358 ACAGTCCCAGCCTACTTCACCGATTCACAACGTCAAGCCACCAAGGATGCTGGTTTAATT 596417 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||||| || ||| | || || || || ||||| || || ||||| | || || ||| Sbjct 596418 GCCGGTCTCAACGTTCTCCGAATCATCAACGAACCCACTGCGGCCGCTATCGCATACGGT 596477 Query 474866 CTTGATAAGAA 474876 || |||||||| Sbjct 596478 CTCGATAAGAA 596488 Score = 100 bits (110), Expect = 2e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || ||||| || || ||||| | ||||||||| | ||||| Sbjct 805821 ACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAAAGAGT 805762 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||||| ||||||||||| || || | |||||||| || || ||||| || Sbjct 805761 GCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGGAATGCC 805702 Query 480671 TTCCTTGTCTTGAATCTT 480688 |||||||| |||||||| Sbjct 805701 CTCCTTGTCCTGAATCTT 805684 >seq67 Length=3716956 Score = 95.1 bits (104), Expect = 8e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 |||||| |||| || |||||| ||| | || || || || ||| ||||||||| || Sbjct 3617535 ATCCAAGTCTTCGAGGGTGAACGAACCATGACCAAGGACAACAACCAACTTGGAAAGTTC 3617594 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 | ||| ||||| || ||||| ||| | || ||||||||||| ||||| |||| || Sbjct 3617595 GAGCTTACCGGTATCCCGCCTGCACCCCGCGGTGTTCCTCAAATCGAAGTCTCTTTCGAG 3617654 Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 |||| || || || ||||| || ||| |||| Sbjct 3617655 CTTGACGCCAACGGAATTCTCAAGGTTTCTGC 3617686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268170406555340