Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq93 132 3e-25
seq67 95.1 8e-14
>seq93
Length=1762202
Score = 132 bits (146), Expect = 3e-25
Identities = 361/551 (66%), Gaps = 4/551 (1%)
Strand=Plus/Plus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
||| || ||||| ||| | ||||| || ||| || || | | | | | ||| |
Sbjct 595940 TGCGATAGGTATCGATCTCGGAACCACATACTCCTGCGTGGGTATCTTCAGAGATGACAG 595999
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
| | ||||| |||||||| |||||||| || |||| || || || | || | || ||
Sbjct 596000 AATCGAAATCATTGCCAACGACCAAGGCAACCGAACTACCCCCTCCTTCGTCGCCTTCAC 596059
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507
|| || || | ||| || |||||||| || || | |||| || || || ||
Sbjct 596060 CGACACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCACAGAA 596119
Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567
|| | || ||||| || | ||||| || || || || | ||| | ||||| |
Sbjct 596120 CACAGTCTTCGATGCGAAGCGTTTGATCGGACGCAAGTTCGCAGATGCTGAGGTCCAGGC 596179
Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627
||||||| || | || || | || || || |||||| || ||| || || |
Sbjct 596180 TGATATGAAGCACTTCCCCTTCACCGTCATTGATCGTGGTGGAAAGCCAGTCATTGAGGT 596239
Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685
| | || | ||||| | || ||||| |||| || |||| ||||||||||| ||
Sbjct 596240 TGAGTTCAAG--GGTGAGAAGAAGCAATTCACACCTGAGGAAATCTCTTCAATGGTCTTG 596297
Query 474686 GCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745
| || ||| | || ||| |||| ||||| | || | | || || |
Sbjct 596298 GTTAAGATGCGCGAGACTGCGGAGGCATACCTTGGTGGAACTGTCAACAACGCTGTCGTC 596357
Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805
|| || ||||| || || | ||||| ||||||||||| || || ||||| || ||||
Sbjct 596358 ACAGTCCCAGCCTACTTCACCGATTCACAACGTCAAGCCACCAAGGATGCTGGTTTAATT 596417
Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865
|| ||||| || ||| | || || || || ||||| || || ||||| | || || |||
Sbjct 596418 GCCGGTCTCAACGTTCTCCGAATCATCAACGAACCCACTGCGGCCGCTATCGCATACGGT 596477
Query 474866 CTTGATAAGAA 474876
|| ||||||||
Sbjct 596478 CTCGATAAGAA 596488
Score = 100 bits (110), Expect = 2e-15
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || ||||| || || ||||| | ||||||||| | |||||
Sbjct 805821 ACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAAAGAGT 805762
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | |||||||| ||||||||||| || || | |||||||| || || ||||| ||
Sbjct 805761 GCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGGAATGCC 805702
Query 480671 TTCCTTGTCTTGAATCTT 480688
|||||||| ||||||||
Sbjct 805701 CTCCTTGTCCTGAATCTT 805684
>seq67
Length=3716956
Score = 95.1 bits (104), Expect = 8e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080
|||||| |||| || |||||| ||| | || || || || ||| ||||||||| ||
Sbjct 3617535 ATCCAAGTCTTCGAGGGTGAACGAACCATGACCAAGGACAACAACCAACTTGGAAAGTTC 3617594
Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140
| ||| ||||| || ||||| ||| | || ||||||||||| ||||| |||| ||
Sbjct 3617595 GAGCTTACCGGTATCCCGCCTGCACCCCGCGGTGTTCCTCAAATCGAAGTCTCTTTCGAG 3617654
Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGC 476172
|||| || || || ||||| || ||| ||||
Sbjct 3617655 CTTGACGCCAACGGAATTCTCAAGGTTTCTGC 3617686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268170406555340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |