Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq93 149 2e-30
seq66 98.7 3e-15
seq160 84.2 6e-11
>seq93
Length=1762202
Score = 149 bits (164), Expect = 2e-30
Identities = 165/220 (75%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
||||||| || || ||||| | ||||||||| | | ||||||||| |||||| | | |
Sbjct 1531892 TTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATCCAAGACAAGAGCTCTA 1531951
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||||| |||||||| || || || | || ||||| || || |||||||| |||
Sbjct 1531952 CCTTTGCTCAACGTCTCGTCGCATTCGCCGCTGTCGAGGGTATCTTCTTCAGTGGATCGT 1532011
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| ||||| || ||| | || ||||||||| | | |||| ||| ||| |||||||
Sbjct 1532012 TCGCATCTATCTTCTGGTTAAAGAAGCGTGGTCTCATGGCTGGTCTGACTTTCTCTAACG 1532071
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
||||||| || | ||||||| ||||||||||| |||||
Sbjct 1532072 AACTTATCTCTCGTGACGAGGGTCTTCACACCGACTTTGC 1532111
>seq66
Length=3360220
Score = 98.7 bits (108), Expect = 3e-15
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| | | ||| |||||||| ||| | ||||| || | || | | ||
Sbjct 2779016 ATCAGTCCACAGATGTCACATACATGGACTCTGAACGCATCCGAAACCTCGAACAACCTC 2778957
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| || || |||||||| ||||||||||||||||||||||| ||||||
Sbjct 2778956 TCCTTCAAGAAAGCAGCAGCTCCGTGTGAGATCATACAATCACGCTCCATTTCTCCGAAA 2778897
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570
|| ||||||||||| | || | ||| || | || ||||| ||
Sbjct 2778896 CGCAGACCACCATCTCTGGCACGACCTTCCACTGGTTGACGGGT 2778853
>seq160
Length=1564179
Score = 84.2 bits (92), Expect = 6e-11
Identities = 142/202 (70%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086
|| |||| ||||||||||| |||||||| || | ||| || | || | || || ||
Sbjct 1276046 TTTCCAATTGCATCAATTTCATCAATGAAGATGATACATGGGGTGTTCTTCCTTGCCATA 1275987
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC--AG 289144
|| || | |||| ||| ||||| || |||| ||||||| |||| || || || || ||
Sbjct 1275986 GCGAAGAGATCTCGTACTCGGGAAGCACCAACACCAACAAACATCTCCACGAACTCGGAG 1275927
Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204
|| || || |||| ||| | ||| | | |||||| || || |||||| | |
Sbjct 1275926 CCGCTGACAC-TGAA-GAAGGGTACTTGGGATTCGCCAGCAGTGGCTTTCGCCAACAACG 1275869
Query 289205 TCTTACCTGTTCCAGGTGGTCC 289226
| ||||| ||||| || |||||
Sbjct 1275868 TTTTACCCGTTCCTGGAGGTCC 1275847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471813734179085
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |