Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq93 149 2e-30 seq66 98.7 3e-15 seq160 84.2 6e-11 >seq93 Length=1762202 Score = 149 bits (164), Expect = 2e-30 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || || ||||| | ||||||||| | | ||||||||| |||||| | | | Sbjct 1531892 TTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATCCAAGACAAGAGCTCTA 1531951 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| |||||||| || || || | || ||||| || || |||||||| ||| Sbjct 1531952 CCTTTGCTCAACGTCTCGTCGCATTCGCCGCTGTCGAGGGTATCTTCTTCAGTGGATCGT 1532011 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || ||||| || ||| | || ||||||||| | | |||| ||| ||| ||||||| Sbjct 1532012 TCGCATCTATCTTCTGGTTAAAGAAGCGTGGTCTCATGGCTGGTCTGACTTTCTCTAACG 1532071 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 ||||||| || | ||||||| ||||||||||| ||||| Sbjct 1532072 AACTTATCTCTCGTGACGAGGGTCTTCACACCGACTTTGC 1532111 >seq66 Length=3360220 Score = 98.7 bits (108), Expect = 3e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | ||| |||||||| ||| | ||||| || | || | | || Sbjct 2779016 ATCAGTCCACAGATGTCACATACATGGACTCTGAACGCATCCGAAACCTCGAACAACCTC 2778957 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || || |||||||| ||||||||||||||||||||||| |||||| Sbjct 2778956 TCCTTCAAGAAAGCAGCAGCTCCGTGTGAGATCATACAATCACGCTCCATTTCTCCGAAA 2778897 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || ||||||||||| | || | ||| || | || ||||| || Sbjct 2778896 CGCAGACCACCATCTCTGGCACGACCTTCCACTGGTTGACGGGT 2778853 >seq160 Length=1564179 Score = 84.2 bits (92), Expect = 6e-11 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||| ||||||||||| |||||||| || | ||| || | || | || || || Sbjct 1276046 TTTCCAATTGCATCAATTTCATCAATGAAGATGATACATGGGGTGTTCTTCCTTGCCATA 1275987 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC--AG 289144 || || | |||| ||| ||||| || |||| ||||||| |||| || || || || || Sbjct 1275986 GCGAAGAGATCTCGTACTCGGGAAGCACCAACACCAACAAACATCTCCACGAACTCGGAG 1275927 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || || || |||| ||| | ||| | | |||||| || || |||||| | | Sbjct 1275926 CCGCTGACAC-TGAA-GAAGGGTACTTGGGATTCGCCAGCAGTGGCTTTCGCCAACAACG 1275869 Query 289205 TCTTACCTGTTCCAGGTGGTCC 289226 | ||||| ||||| || ||||| Sbjct 1275868 TTTTACCCGTTCCTGGAGGTCC 1275847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813734179085