Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq160 111 2e-18 seq93 107 3e-17 seq71 91.5 2e-12 >seq160 Length=1564179 Score = 111 bits (122), Expect = 2e-18 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||| |||||||||||||| || | || ||||||||||| ||||| | | Sbjct 660590 CCAACTACCTCGATATCAAGCCCCTCCTTGACGTTGGTTGCAAGACCGTTGCCAATATGA 660649 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 ||||||| ||||| || ||||| || || ||||| || ||||||| | ||| Sbjct 660650 TCAAGGGAAAGTCCCCAGAGGAGATTCGAAAGACATTCAACATCACGAACG 660700 >seq93 Length=1762202 Score = 107 bits (118), Expect = 3e-17 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || || || || ||| |||||| ||||||||||| || | || ||||| |||||| Sbjct 1532399 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGTGAGATGTTCTCCATG 1532340 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 | ||| |||||||| | | |||| ||||||| || || | |||| || || Sbjct 1532339 AAGTCGAATGGGTTGGCTGACTTGTAGACCTTCTCGTTGCCAAGAGCAACAAGGAGACGA 1532280 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087 || || ||||| || ||||| || ||||||| || ||||||||||| ||| || Sbjct 1532279 TCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCGAGGAGTGCGCAA 1532220 Query 794088 GGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGA 794139 || || | |||| | | ||||| | ||| ||||| || |||||| | |||| Sbjct 1532219 GGAAGAGCCTCGGTCAAGAACTCCTGCTCAATCTCAACAGCCTCGGTAATGA 1532168 >seq71 Length=3933241 Score = 91.5 bits (100), Expect = 2e-12 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442 ||||||||||| ||| | || ||||| || |||||||| | ||| | ||| || Sbjct 255916 AGATCAATCTTCGAGTCCGCATCGCTTGCACTCATCTTTGCAGCCTCTCCCAAGCCTGGT 255975 Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGC--GGTAGCCCAGCGCCGGCAGGTGGTCGC 2411500 |||| || ||| | || || ||| | | |||||| | | ||||| | || Sbjct 255976 ACCATCGAGTTCATCAAATG--TGCCCGGACCTTGTAGCCAATCTTTGGCAGATTCTCCA 256033 Query 2411501 GCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGT 2411560 |||| || | |||||||| | ||||| || ||||| || |||||||| ||||||| Sbjct 256034 GCGCGAATGTGAAGATCTTTCTTTGGTCAACTCCTCCAAATTGAGCGTCGACATCGAGGT 256093 Query 2411561 GCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 2411593 |||||||| |||| |||||||| ||||||| Sbjct 256094 ATTGCTCGTCCAGGGATTGCATGAGGGGGTAGA 256126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916224593214995