Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq93 129 1e-24 seq62 89.7 1e-12 >seq93 Length=1762202 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || |||||||| || || || ||||| ||||| || || || || |||| || Sbjct 806326 ACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGGGTTCTGCC 806267 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | ||| || || || ||||| || | ||| ||||| || || || || ||||| Sbjct 806266 ATCCTCCAATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGGATACCCTCCTT 806207 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||| | || || || || || || || | ||| || || | ||| || Sbjct 806206 ATCTTGAATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACCTCAAGAGTGAT 806147 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| || || |||||||| Sbjct 806146 GGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111 Score = 122 bits (134), Expect = 2e-22 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || ||||| || |||||||| ||||||||||| | Sbjct 805828 TACCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCG 805769 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | |||||||| || || |||||||| ||||| | | |||||| || || | Sbjct 805768 AAAGAGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGG 805709 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || |||||| ||||| |||||||| || || ||||| | | || Sbjct 805708 GAATGCCCTCCTTGTCCTGAATC-TTGCTCTTTACATTATCGATGGTATCGCTGGACTCA 805650 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || | || || |||||||| || Sbjct 805649 ACCTCGAGGGTGATGGTCTTGCCAGT 805624 Score = 120 bits (132), Expect = 6e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || || || ||||| || || || || || || || || | | | ||| Sbjct 806554 ACGGAGCACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGACC 806495 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | ||| || ||||||||||| | || || || || || || || || ||||| Sbjct 806494 ATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATACCCTCCTT 806435 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| |||||||||| || ||||| ||||| || || | || |||||||| || || Sbjct 806434 ATCCTGAATCTTTGACTTGACATTGTCAATGGTGTCTGACGACTCCACTTCCAATGTGAT 806375 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| ||||| |||||||| Sbjct 806374 TGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 806339 >seq62 Length=1271336 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| || || || || || || | | || || || ||||| |||||||||||||| Sbjct 898283 TTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATC 898342 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | || || || || || || ||||| ||||| || || ||||| | || || || || Sbjct 898343 AATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 898402 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||||||| | | || || || | ||| || |||||||| || | ||||| || || Sbjct 898403 ATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 898461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824621169495