Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq124 205 1e-47 seq93 105 8e-18 seq160 93.3 5e-14 >seq124 Length=198120 Score = 205 bits (226), Expect = 1e-47 Identities = 1006/1580 (64%), Gaps = 37/1580 (2%) Strand=Plus/Plus Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584 || ||||| || || |||||| |||||| ||| ||||||| | | || |||||| Sbjct 125238 ATCTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGGATGTTGGGAATGTTCTGG 125297 Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 || ||||| || | | ||| | | |||||| | | ||||| ||||| || | Sbjct 125298 ATAGAACCACCATCGGCGATGATGCGGTTCTTCATGTTGTCAGACCATAGACCCATATCG 125357 Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 ||| || || | ||| |||||| | || ||||| || || | | Sbjct 125358 ACGAGATCCTTCAGGAGCCATGGGTTGACGACCTGGAATTCACCAGCAAGAACACGACGA 125417 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764 ||||||||| | ||||||||| || ||||| || || || | ||||| ||| Sbjct 125418 GAGTAGATGTTGGATGTGTATGGCTCGAAGCACTCGTTGAAGCCGAGAATTTGACTGGTA 125477 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 ||| |||||||| || || | | | ||||| |||| ||| | || |||||| | Sbjct 125478 CTGGCAGTTGGCATGGGAGCAACGAGCAAGCTGTTGCGAACACCGTGCTGCTTGATCTGC 125537 Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 | ||| | ||||||||| || | | | || | || ||||||||||| |||| Sbjct 125538 TGCTTCAAGGTATCCCAGTCCCAGAGGTCGGTAGGAGTGACAC-CCCACATGTCATACTG 125596 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 |||| | || | ||| |||| ||||| || | || || || | || || | | || Sbjct 125597 AAGCTCACCCTTGGAGACGGGTGAACCTTCGTATGTCTCGTATGGTCCGTGAACCTTGGC 125656 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | ||| | || | ||||| || ||||| || ||||| | || | Sbjct 125657 AAGCTCAACTGAAGAAGTGAGAGCGGCGTGGTAAATGGTCTCGAAGATCTGGATGTTGAG 125716 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGC-ACAAAATAAATACATCCGCGAGAC 111062 | |||||| ||| || || |||| |||| | || ||| |||| || |||| Sbjct 125717 GTGCTTGGCCTCAGGAGAGTCGAATGGAAGGCGGAGAGCCAAGAAAG-CATCAGCAAGAC 125775 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---A 111119 |||| ||||| | | ||||||||| ||| || | || ||| || ||| | Sbjct 125776 CTTGGACACCGACAGCAATAGGTCGGTGACGGAAGTTGCTCTTCTTGGC---CTCGGGGA 125832 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 | || || | || ||||||| ||| || || ||| |||| || || || Sbjct 125833 CAGGGTAGTAGTTGACATCAATGATCTTGTTCAGGTTCTTGACGACAACCTGGCAGACTT 125892 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 | || || || || | || | || | | | ||||| || | || || || | Sbjct 125893 CGTGGAGCTTCGCAAAGTCGTAGGTACCATCGTTGGTGTTGACGTAGGTGGGGAGAGCAA 125952 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 || ||||| ||||||||||| |||||| | | |||||| | ||| || || | Sbjct 125953 GGGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCACAGTACTCCACAATCTCAGTGC 126012 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | | |||||| || ||| || || | ||||| ||||| ||||| | ||||| |||| Sbjct 126013 AGAGGTTGGAGCTTCGAATTGTGCCGAGGTTCTTCTGGTTGCTCTTTCTATTGCAAGCAT 126072 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 |||||||||||||| | || |||| ||||| ||||||| | | || | | ||||| Sbjct 126073 CCTTGTAGAGCATGAATGGATTCCCAGTCTCGGTCTGTGCCTCCAAGATGGAGTACCAAA 126132 Query 111420 -CATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCTCCGC-CTCGTACTTTGTGTAG 111475 || | | || | |||| || | ||| | ||| | | ||||||||| ||| Sbjct 126133 GTTTCTGTGCCTTG----ATGGTCTTGCGACCCTTGCCTTCACGCTCGTACTTCTCGTAT 126188 Query 111476 AGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA 111535 || || || ||||| ||||| | || | | ||||| || || || || | Sbjct 126189 AGAGCCTCGAACTCATCACCATAGACATCAGCCAAGCCTGGGCACTCGTTGGGGCACATC 126248 Query 111536 AGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGAT 111595 | || ||| | ||| | |||||| ||||||||||| || || || ||||||| || Sbjct 126249 AAAGTCCACTCTCCATTCTTCTCAACACGCTTCATGAAGAGATCAGGGATCCACAAGGCG 126308 Query 111596 GAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAAC 111655 | |||||||| | | || | || || | || ||||| ||| | |||||| || Sbjct 126309 TAGAAGAGATCACGAGCTCGGACTTCCTCTTTGCCGTGGTTCTTTCGGAGATCAAGGTAC 126368 Query 111656 TCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACG 111711 || | || ||| |||||||||||||| || |||| |||| || || || | | | Sbjct 126369 TCGAAGACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGTCTCTTGTTG 126428 Query 111712 CCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACC 111771 ||| |||| | || || | || ||| ||| || || || ||||| |||| ||||| Sbjct 126429 -CCACCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGTAGCATGGGAACGATACC 126487 Query 111772 ATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTG 111831 | || | || || || ||| ||| | | || | ||| | | || Sbjct 126488 GTTGGAGTTTCCGTTCGTTCCCGCAAT---GTAGGCACCGG-TAGCACGAATTCGGTGAA 126543 Query 111832 CAT----CCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCC 111885 ||| || || || ||||| ||| ||||| | ||||| | | | | | || | Sbjct 126544 CATTGAGACCGATTCCACCAGCATTCTTGGAGATCATGGCGCA-AGT-CTTCAATGTATC 126601 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 |||||||||| || ||||| || || ||||||||||||| || | || | Sbjct 126602 GTAGATACCGTCAATGCTATCCTCTTTCATGTCGATAAGGAAGCATGAAGAGAGTTGTGC 126661 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTGGGACA 112004 | ||||||||| || ||| | ||||| | || || |||| || | ||||||| Sbjct 126662 TTGTGGTGTACCGGCGGCGAATAAAGTTGGGGAAGCATGGGTGAAGCACTTC-TGGGACA 126720 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064 || || ||||||||| | | ||| ||||| ||||| ||||| || || | || || | Sbjct 126721 TCAAGTTGTATGTCTCGATGGCAGCCTCAATATCTTCACCGTGAATACCAACAGCCACTC 126780 Query 112065 GCATGAACATGTACTGTGGG 112084 |||| | ||| | |||||| Sbjct 126781 GCATAATCATATGTTGTGGG 126800 >seq93 Length=1762202 Score = 105 bits (116), Expect = 8e-18 Identities = 335/516 (65%), Gaps = 14/516 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| || || |||||||| |||||||||||||| || |||| ||||| ||||| Sbjct 1532399 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGTGAGATGTTCTCCATG 1532340 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 122484 ||||| ||||| || | || | | | | || || |||| ||| Sbjct 1532339 AAGTCGAATGGGTTGGCTGACTTGTAGACCTTCTCGTTGCCAAGAGCAACA------AGG 1532286 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 |||||||| | || |||| ||||| | ||| | |||||||| |||| ||| Sbjct 1532285 AGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCGAGGAGT 1532226 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 || || || || || | |||| | | |||||||||||| ||||| | | || | Sbjct 1532225 GCGCAAGGAAGAGCCTCGGTCAAGAACTCCTGCTCAATCTCAACAGCCTCGGTAATGACG 1532166 Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 122664 | |||| | || | | || | | |||| |||||| ||||| Sbjct 1532165 TCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAATGAGAGAAGAGAAGGCAAGCAAAG 1532106 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 || ||| |||||||| || || || |||||||| || ||||| ||||| | |||| Sbjct 1532105 TCGGTGTGAAGACCCTCGTCACGAGAGATAAGTTCGTTAGAGAAAGTCAGACCAGCCATG 1532046 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 ||||| |||||||| ||||| | |||| ||| || || ||||||||||||||| Sbjct 1532045 AGACCACGCTTCTTTAACCAGAAGATAGATGCGAACGATCCACTGAAGAAGATACCCTCG 1531986 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAAACCATTT 122843 ||| || || || | || |||| || |||| || | ||| | | | |||| | Sbjct 1531985 ACAGCGGCGAATGCGACGAGACGTTGAGCAAAGGTAGAG-CTCTTGTCTTGGATCCATCT 1531927 Query 122844 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 | ||||| | |||||||||| || || || || Sbjct 1531926 GACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAAC 1531891 >seq160 Length=1564179 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGATTTCAAAGAG 11688 |||||||| ||||||||||||| |||||||| || | ||| | || || | ||||| Sbjct 1276037 GCATCAATTTCATCAATGAAGATGATACATGGGGTGTTCTTC-CTTGCCATAGCGAAGAG 1275979 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT--TTGCGGCAGAG 11746 ||| || || | ||||| |||||||||||||||||||| || | || || || Sbjct 1275978 ATCTCGTACTCGGGAAGCACCAACACCAACAAACATCTCCACGAACTCGGAGCCGCTGA- 1275920 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 |||| || ||| || || | ||||| || || ||||| || | | || || ||| Sbjct 1275919 CACT-GAAGAAGGGTACTTGGGATTCGCCAGCAGTGGCTTTCGCCAACAACGTTTTACCC 1275861 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 || ||||| || | |||| || ||||| || ||||| |||||| Sbjct 1275860 GTTCCTGGAGGTCCGGAAAGAATAGCACCTCGTGGTATCTTAGCACCA 1275813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030390668000