Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq124 219 5e-52 seq93 125 8e-24 seq160 109 6e-19 >seq124 Length=198120 Score = 219 bits (242), Expect = 5e-52 Identities = 1122/1751 (64%), Gaps = 55/1751 (3%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 |||||| | ||| | ||||| ||||| | |||||||| || ||||| ||||| ||| Sbjct 126800 CCCACAACATATGATTATGCGAGTGGCTGTTGGTATTCACGGTGAAGATATTGAGGCTGC 126741 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCT 104339 | | ||||||||| || ||||||||| | || |||| || || | ||||| | | Sbjct 126740 CATCGAGACATACAACTTGATGTCCCA-GAAGTGCTTCACCCATGCTTCCCCAACTTTAT 126682 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 || || ||||||||| | | ||| | || ||||||||||||| || || |||| Sbjct 126681 TCGCCGCCGGTACACCACAAGCACAACTCTCTTCATGCTTCCTTATCGACATGAAAGAGG 126622 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457 | || |||||||||| | || | | | | | ||||| | ||||| ||| || Sbjct 126621 ATAGCATTGACGGTATCTACGATACATTGAAG-ACT-TGCGCCATGATCTCCAAGAATGC 126564 Query 104458 TGGGGGTATTGGG----ATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 104513 ||| || || || ||| || | | ||| | || | | ||| || Sbjct 126563 TGGTGGAATCGGTCTCAATGTTCACCGAATTCGTGCTA-CCGGTGCCTAC---ATTGCGG 126508 Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | || || || | || | ||||| |||| ||||| || || || ||| ||| || Sbjct 126507 GAACGAACGGAAACTCCAACGGTATCGTTCCCATGCTACGTGTCTTCAACAACACTGCCA 126448 Query 104574 GCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCA 104629 | || || | |||| ||| | | | || || || |||| |||| || |||||| Sbjct 126447 GATACGTCGACCAAGGTGG-CAACAAGAGACCAGGTGCTTTCGCCATCTACCTCGAGCCA 126389 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 |||||||| ||| || | |||| |||||| | || ||||| || | ||||| | Sbjct 126388 TGGCACGCAGATGTCTTCGAGTACCTTGATCTCCGAAAGAACCACGGCAAAGAGGAAGTC 126329 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 || || |||||||||| ||| | ||||| || ||||||||||||||| | |||||| Sbjct 126328 CGAGCTCGTGATCTCTTCTACGCCTTGTGGATCCCTGATCTCTTCATGAAGCGTGTTGAG 126269 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 ||| ||| | ||| || | | || || || || || || | | |||| | Sbjct 126268 AAGAATGGAGAGTGGACTTTGATGTGCCCCAACGAGTGCCCAGGCTTGGCTGATGTCTAT 126209 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GA 104867 ||||| ||||| || || || ||| ||||||||| ||||| | | | | || || Sbjct 126208 GGTGATGAGTTCGAGGCTCTATACGAGAAGTACGAGCGTGAAGG-CAAGGGTC-GCAAGA 126151 Query 104868 CGGTGCCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | | | || | | | | ||| | | || | || | || ||||||||||| | Sbjct 126150 CCAT-CAAGGCACAGAAACTTTGGTACTCCATCTTGGAGGCACAGACCGAGACTGGGAAT 126092 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 |||| |||||| ||||| || || || || |||||| || || ||||| | || Sbjct 126091 CCATTCATGCTCTACAAGGATGCTTGCAATAGAAAGAGCAACCAGAAGAACCTCGGCACA 126032 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 || || ||||| ||||| || || || |||| | | |||||| ||| Sbjct 126031 ATTCGAAGCTCCAACCTCTGCACTGAGATTGTGGAGTACTGTGCTCCTGATGAGGTCGCT 125972 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACAT 105104 || || ||| | || || | |||||||||| || || | || || | | || | Sbjct 125971 GTTTGCAACTTGGCTTCCCTTGCTCTCCCCACCTACGTCAA--CACCAACGATGGTACCT 125914 Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164 || | || || ||||||||||| | |||| ||| ||||| |||| | | Sbjct 125913 ACGACTTTGCGAAGCTCCACGAAGTCTGCCAGGTTGTCGTCAAGAACCTGAACAAGATCA 125854 Query 105165 TTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221 ||||| || | ||||| || ||| | | | | | | || | | ||||| | Sbjct 125853 TTGATGTCAACTACTACCCTGTCCCCGAGGC--CAAGAAGAGC-AACTTCCGTCACCGAC 125797 Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 105281 | |||| | ||||||| || ||||| || |||| ||| | | |||| |||| | Sbjct 125796 CTATTGCTGTCGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTCCGCCTTCCATTCG 125737 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | || || || ||| | |||| | || || |||||||| || |||||||||| Sbjct 125736 ACTCTCCTGAGGCCAAGCACCTCAACATCCAGATCTTCGAGACCATTTACCACGCCGCTC 125677 Query 105342 TTGAGGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 | | |||| ||| | || ||||| | || ||||| || || | || ||||| Sbjct 125676 TCACTTCTTCAGTT--GAGCTTGCCAAGGTTCACGGACCATACGAGACATACGAAGGTTC 125619 Query 105400 TCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCAC 105457 || | || |||||| | |||||| | ||| ||||||| || | || | | | | Sbjct 125618 ACCCGTCTC-CAAGGGTGAGCTTCAGTATGACATGTGGG-GTGTCACTCCTACCGACCTC 125561 Query 105458 TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517 | |||||||| | | ||| | | |||||| || | ||| |||| ||||| | ||| Sbjct 125560 TGGGACTGGGATACCTTGAAGCAGCAGATCAAGCAGCACGGTGTTCGCAACAGCTTGCTC 125501 Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577 | ||||| |||||||| ||| ||| ||||| | || || || ||||| || Sbjct 125500 GTTGCTCCCATGCCAACTGCCAGTACCAGTCAAATTCTCGGCTTCAACGAGTGCTTCGAG 125441 Query 105578 CCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 105636 || ||||| | |||||||| ||| | | || || || || || | | ||||| Sbjct 125440 CCATACACATCCAACATCTACTCT-CGTCGTGTTCTTGCTGGTGAATTCCAGGTCGTCAA 125382 Query 105637 CAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGAT 105694 | ||| ||| || | || ||| || || ||||| ||||| | | |||||| | Sbjct 125381 C--CCATGGCTCCTGAAGGATCTCGTCGATATGGGTCTATGGTCTGACAACATGAAGAAC 125324 Query 105695 CTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAG 105754 | ||| | | |||||||| || || || ||| | || ||| ||| || ||| Sbjct 125323 CGCATCATCGCCGATGGTGGTTCTATCCAGAACATTCCCAACATCCCAGCTGACATCAAG 125264 Query 105755 AAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA--TGTCATTGACATGGCCGCAG 105812 | ||| || || ||||| ||| | || || || | | |||||||| | Sbjct 125263 GCTCTCTACAAGACCGTCTGGGAGATC--TCTCAACGAACAATCGTCCAGATGGCCGCTG 125206 Query 105813 ATCGTGGTCGCTT-CATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACG 105871 | |||||| |||| ||| |||||| |||| ||||| || ||| || ||| || Sbjct 125205 ACCGTGGT-GCTTACATCGATCAATCTCAATCGATGAACATCCATATGAAAGATCCCACA 125147 Query 105872 ATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATG 105931 ||| |||| || | |||||| | | |||||| ||| | || || || ||| Sbjct 125146 ATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGTTGGGCTTGAAGACTGGCATG 125087 Query 105932 TATTACCTCCG 105942 ||||||||||| Sbjct 125086 TATTACCTCCG 125076 >seq93 Length=1762202 Score = 125 bits (138), Expect = 8e-24 Identities = 347/521 (67%), Gaps = 22/521 (4%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||||| || || | ||||| || || |||||| | | ||| | | |||| | | Sbjct 1531890 AGTTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATCCAAGACAAGAGCTC 1531949 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 | |||||||| | || ||| ||||||| || ||| ||||||||||||||| ||| | Sbjct 1531950 -TACCTTTGCTCAACGTCTCGTCGCATTCGCCGCTGTCGAGGGTATCTTCTTCAGTGGAT 1532008 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 | ||| |||| | ||| | |||||||| ||||||||| | ||||| ||||| | Sbjct 1532009 CGTTCGCATCTATCTTCTGGTTAAAGAAGCGTGGTCTCATGGCTGGTCTGACTTTCTCTA 1532068 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAAT 94972 |||| |||||||||||||||||||| || ||| || ||||| || ||| || | Sbjct 1532069 ACGAACTTATCTCTCGTGACGAGGGTCTTCACACCGACTTTGC-TTG--CCTTCTC---T 1532122 Query 94973 TATTGCGTATTAAACCAACGACTGAG--ACTATTCATTCTA-----TTGTTAAGGAAGCC 95025 | | | | || || || || | || | | | || | | ||| || || Sbjct 1532123 TCTCTCAT-TTGAAGCACCGCCCAAGCAAGCAAGCCGTCCAAGACGTCATTACCGAGGCT 1532181 Query 95026 GTTGAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAAT 95085 |||||||||||| | | ||| | || || ||||| ||||| ||| |||| ||||| Sbjct 1532182 GTTGAGATTGAGCAGGAGTTCTTGACCGAGGCTCTTCCTTGCGCACTCCTCGGCATGAAC 1532241 Query 95086 TCTGAAAAAATGTCTGAATATATTGAGTATGTATCTGATAG-ATTGTTGAAGCAGATCGG 95144 || | ||| |||| || |||| || ||||| | | ||| || || Sbjct 1532242 TCCAACCTCATGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTTGTTGC---TCTT 1532298 Query 95145 GGTGCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTC 95202 || | || | | || || || ||||| ||||||||||||||||| || Sbjct 1532299 GGCAACGAGAAGGTCTACAAGTCAGCCAACCCATTCGACTTCATGGAGAACATCTCACTT 1532358 Query 95203 GACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243 | ||| ||||| ||||||||||| ||| | ||||| ||||| Sbjct 1532359 GCCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 1532399 >seq160 Length=1564179 Score = 109 bits (120), Expect = 6e-19 Identities = 223/323 (69%), Gaps = 10/323 (3%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9671 || ||||||||||| ||||| | ||||||| || ||| | |||||| || | | | Sbjct 1276133 AAGCCATCCATCTCCGTCAAGATCTGGTTAAGCGTAGCTTCTCTTTCATCGTTGCCACCG 1276074 Query 9672 GCATACCA-CCAGCACTGCGTTG---CTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 || | | || || | | | |||||| | |||||||| ||||||||||||| | Sbjct 1276073 CCAAATGAACCTGCCTTTCCACGAGCCTTTCCAATTGCATCAATTTCATCAATGAAGATG 1276014 Query 9728 ATGCATGGT-TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 9786 || ||||| || | ||| | || | | |||||||| ||||| || || || || Sbjct 1276013 ATACATGGGGTGTTCTTC-CTTGCCATAGCGAAGAGATCTCGTACTCGGGAAGCACCAAC 1275955 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGATT 9845 |||||||||||||||||| || | | | || ||| | || |||||| || | |||| Sbjct 1275954 ACCAACAAACATCTCCACGAACTCGGAGCCGCTGACACT-GAAGAAGGGTACTTGGGATT 1275896 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9905 | || ||| ||||| || | | || |||||||| ||||| || | || | | Sbjct 1275895 CGCCAGCAGTGGCTTTCGCCAACAACGTTTTACCCGTTCCTGGAGGTCCGGAAAGAATAG 1275836 Query 9906 CACCTCGTGGAATCTTGGCGCCA 9928 |||||||||| ||||| || ||| Sbjct 1275835 CACCTCGTGGTATCTTAGCACCA 1275813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259305394200