Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq93 241 4e-58 seq62 93.3 1e-13 >seq93 Length=1762202 Score = 241 bits (266), Expect = 4e-58 Identities = 500/740 (68%), Gaps = 16/740 (2%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || ||||| |||||| | || || || || || || || | | | | | |||| | Sbjct 595941 GCGATAGGTATCGATCTCGGAACCACATACTCCTGCGTGGGTATCTTCAGAGATGACAGA 596000 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | ||||| ||||| || || ||||| ||| |||| || || || | ||| || || ||| Sbjct 596001 ATCGAAATCATTGCCAACGACCAAGGCAACCGAACTACCCCCTCCTTCGTCGCCTTCACC 596060 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| |||| || ||| | ||||| || |||| || || ||| | || Sbjct 596061 GACACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCACAGAAC 596120 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACA 349432 || || || ||||| ||||| | || || | ||||| | |||| || Sbjct 596121 ACAGTCTTCGATGCGAAGCGTTTGATCGGACGCAAGTTCGCAGATGCTGAGG--TC---- 596174 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || ||||| | || || || || || || || || | |||| || ||| | Sbjct 596175 CAGGCTGATATGAAGCACTTCCCCTTCACCGTCATTG---ATCGTGGTGGAAAGCCAGTC 596231 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552 ||||||||||| | || ||||| | || ||||| ||| || ||||| || |||||| Sbjct 596232 ATTGAGGTTGAGTTCAAGGGTGAGAAGAAGCAATTCACACCTGAGGAAATCTCTTCAATG 596291 Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612 || || ||||| ||| || | ||| || ||||| | |||| ||| || | | ||| Sbjct 596292 GTCTTGGTTAAGATGCGCGAGACTGCGGAGGCATACCTTGGTGGAACTGTCAACAACGCT 596351 Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 || | || || |||||||| || | ||| | || ||| || || || |||||||| Sbjct 596352 GTCGTCACAGTCCCAGCCTACTTCACCGATTCACAACGTCAAGCCACCAAGGATGCTGGT 596411 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 ||||| || | || ||||| |||| || || ||||||||||| || || || ||| Sbjct 596412 TTAATTGCCGGTCTCAACGTTCTCCGAATCATCAACGAACCCACTGCGGCCGCTATCGCA 596471 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || || ||||| | | ||| || || |||| || || ||| | ||||| Sbjct 596472 TACGGTCTCGATAAGAAGGTTGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGGA 596531 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 || ||||| ||||| || || | || |||| ||||| || || ||||| || | ||| Sbjct 596532 GGAACTTTCGATGTCTCCCTCTTGACCATTGAGGAGGGTATCTTCGAAGTCAAGTCCACT 596591 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 ||||||||||| || | ||||| || ||||| ||||| | ||||| || || || Sbjct 596592 GCTGGTGATACCCACTTGGGTGGTGAGGATTTCGATAACAGACTCGTCAACCACTTCGTC 596651 Query 349913 AAAGAATTTAAGCGTCAAGC 349932 || || || ||||| ||||| Sbjct 596652 AACGAGTTCAAGCG-CAAGC 596670 Score = 136 bits (150), Expect = 1e-26 Identities = 161/213 (76%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || ||||| ||||| |||||||| || ||||||| Sbjct 805834 TTTGCATACCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTAT 805775 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || || |||||||| || |||||||| ||||| | ||||| || | Sbjct 805774 AATCCGAAAGAGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGT 805715 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || ||||| || || || |||||||| || ||| ||||||||||| || | ||| | | Sbjct 805714 CGGGGGGAATGCCCTCCTTGTCCTGAATCTT-GCTCTTTACATTATCGATGGTATC-GCT 805657 Query 140682 GG-TTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| || || || | ||||| || || Sbjct 805656 GGACTCAACCTCGAGGGTGATGGTCTTGCCAGT 805624 Score = 136 bits (150), Expect = 1e-26 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | ||| ||||| ||||| |||||||| || || || Sbjct 806566 ACCACCACGGAGACGGAGCACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCT 806507 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || ||||| || | ||| || ||||||||||| | || ||||| ||||| || Sbjct 806506 CAAGGTACGACCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGTGG 806447 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || ||||||||||| || | || ||||| ||||| | || || | || || Sbjct 806446 AATACCCTCCTTATCCTGAATCTTTGACTTGACATTGTCAATGGTGTCTGACGACTCCAC 806387 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| | ||| | |||||| || || | || || ||||| |||||||| Sbjct 806386 TTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 806339 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || | || || || ||||| || |||||||| || || Sbjct 806341 CATGCCACCACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTC 806282 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | |||| ||||| || | ||| || || || ||||| |||||||||||||| || Sbjct 806281 TGACAGGGTTCTGCCATCCTCCAATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGG 806222 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||| ||||| || | || || || || || | || |||| ||| Sbjct 806221 TGGGATACCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTC 806162 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || | ||||||||||| | || || || || |||||||| Sbjct 806161 AACCTCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111 >seq62 Length=1271336 Score = 93.3 bits (102), Expect = 1e-13 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || ||||| || || || || | || || ||||| |||||||| |||||||||||||| Sbjct 898283 TTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATC 898342 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | || ||||| || || || ||||| || || ||||| || || | || || || || Sbjct 898343 AATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 898402 Query 140670 ATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 |||| ||| | ||| || || ||||| || | ||||| || || || || || || || Sbjct 898403 ATCGTATC-GCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 898461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515250420089615