Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq93 241 4e-58
seq62 93.3 1e-13
>seq93
Length=1762202
Score = 241 bits (266), Expect = 4e-58
Identities = 500/740 (68%), Gaps = 16/740 (2%)
Strand=Plus/Plus
Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258
|| ||||| |||||| | || || || || || || || | | | | | |||| |
Sbjct 595941 GCGATAGGTATCGATCTCGGAACCACATACTCCTGCGTGGGTATCTTCAGAGATGACAGA 596000
Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318
| ||||| ||||| || || ||||| ||| |||| || || || | ||| || || |||
Sbjct 596001 ATCGAAATCATTGCCAACGACCAAGGCAACCGAACTACCCCCTCCTTCGTCGCCTTCACC 596060
Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378
|| || |||||| |||| || ||| | ||||| || |||| || || ||| | ||
Sbjct 596061 GACACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCACAGAAC 596120
Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACA 349432
|| || || ||||| ||||| | || || | ||||| | |||| ||
Sbjct 596121 ACAGTCTTCGATGCGAAGCGTTTGATCGGACGCAAGTTCGCAGATGCTGAGG--TC---- 596174
Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492
|| ||||| | || || || || || || || || | |||| || ||| |
Sbjct 596175 CAGGCTGATATGAAGCACTTCCCCTTCACCGTCATTG---ATCGTGGTGGAAAGCCAGTC 596231
Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552
||||||||||| | || ||||| | || ||||| ||| || ||||| || ||||||
Sbjct 596232 ATTGAGGTTGAGTTCAAGGGTGAGAAGAAGCAATTCACACCTGAGGAAATCTCTTCAATG 596291
Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612
|| || ||||| ||| || | ||| || ||||| | |||| ||| || | | |||
Sbjct 596292 GTCTTGGTTAAGATGCGCGAGACTGCGGAGGCATACCTTGGTGGAACTGTCAACAACGCT 596351
Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672
|| | || || |||||||| || | ||| | || ||| || || || ||||||||
Sbjct 596352 GTCGTCACAGTCCCAGCCTACTTCACCGATTCACAACGTCAAGCCACCAAGGATGCTGGT 596411
Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732
||||| || | || ||||| |||| || || ||||||||||| || || || |||
Sbjct 596412 TTAATTGCCGGTCTCAACGTTCTCCGAATCATCAACGAACCCACTGCGGCCGCTATCGCA 596471
Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792
|| || || ||||| | | ||| || || |||| || || ||| | |||||
Sbjct 596472 TACGGTCTCGATAAGAAGGTTGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGGA 596531
Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852
|| ||||| ||||| || || | || |||| ||||| || || ||||| || | |||
Sbjct 596532 GGAACTTTCGATGTCTCCCTCTTGACCATTGAGGAGGGTATCTTCGAAGTCAAGTCCACT 596591
Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912
||||||||||| || | ||||| || ||||| ||||| | ||||| || || ||
Sbjct 596592 GCTGGTGATACCCACTTGGGTGGTGAGGATTTCGATAACAGACTCGTCAACCACTTCGTC 596651
Query 349913 AAAGAATTTAAGCGTCAAGC 349932
|| || || ||||| |||||
Sbjct 596652 AACGAGTTCAAGCG-CAAGC 596670
Score = 136 bits (150), Expect = 1e-26
Identities = 161/213 (76%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||| ||||| | | || || ||||| ||||| |||||||| || |||||||
Sbjct 805834 TTTGCATACCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTAT 805775
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||| || | || || || |||||||| || |||||||| ||||| | ||||| || |
Sbjct 805774 AATCCGAAAGAGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGT 805715
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| || ||||| || || || |||||||| || ||| ||||||||||| || | ||| | |
Sbjct 805714 CGGGGGGAATGCCCTCCTTGTCCTGAATCTT-GCTCTTTACATTATCGATGGTATC-GCT 805657
Query 140682 GG-TTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| ||||| || || || | ||||| || ||
Sbjct 805656 GGACTCAACCTCGAGGGTGATGGTCTTGCCAGT 805624
Score = 136 bits (150), Expect = 1e-26
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || | ||| ||||| ||||| |||||||| || || ||
Sbjct 806566 ACCACCACGGAGACGGAGCACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCT 806507
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| || || ||||| || | ||| || ||||||||||| | || ||||| ||||| ||
Sbjct 806506 CAAGGTACGACCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGTGG 806447
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||| || || ||||||||||| || | || ||||| ||||| | || || | || ||
Sbjct 806446 AATACCCTCCTTATCCTGAATCTTTGACTTGACATTGTCAATGGTGTCTGACGACTCCAC 806387
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| | ||| | |||||| || || | || || ||||| ||||||||
Sbjct 806386 TTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 806339
Score = 132 bits (146), Expect = 1e-25
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||| |||||||| | | || || | || || || ||||| || |||||||| || ||
Sbjct 806341 CATGCCACCACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTC 806282
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | |||| ||||| || | ||| || || || ||||| |||||||||||||| ||
Sbjct 806281 TGACAGGGTTCTGCCATCCTCCAATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGG 806222
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || ||||| ||||| || | || || || || || | || |||| |||
Sbjct 806221 TGGGATACCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTC 806162
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| ||||| || | ||||||||||| | || || || || ||||||||
Sbjct 806161 AACCTCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111
>seq62
Length=1271336
Score = 93.3 bits (102), Expect = 1e-13
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| ||||| || || || || | || || ||||| |||||||| ||||||||||||||
Sbjct 898283 TTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATC 898342
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
| || ||||| || || || ||||| || || ||||| || || | || || || ||
Sbjct 898343 AATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 898402
Query 140670 ATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728
|||| ||| | ||| || || ||||| || | ||||| || || || || || || ||
Sbjct 898403 ATCGTATC-GCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 898461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515250420089615
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |