Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq93 105 4e-18
seq62 87.8 1e-12
>seq93
Length=1762202
Score = 105 bits (116), Expect = 4e-18
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||||||||||||| ||||||||||||||| || || | || ||
Sbjct 806556 AGACGGAGCACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGA 806497
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | ||| ||||| ||||| || || ||||| ||||| || || | ||||||
Sbjct 806496 CCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATACCCTCC 806437
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| || ||| |||| || || | ||| |||||| ||||||||||| ||
Sbjct 806436 TTATC-CTGAATCTTTGACTTGACATTGTCAATGGTGTCTGACGACTCCACTTCCAATGT 806378
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || || ||||| |||||||||
Sbjct 806377 GATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATG 806338
Score = 98.7 bits (108), Expect = 6e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||| | || | |||||||||| ||| || || || |||||||| |||
Sbjct 805826 CCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAA 805767
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||||||||| || || || || || || || || |||||||| || ||
Sbjct 805766 AGAGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGGA 805707
Query 34600 ACTCCCTCCTTGTC 34613
| |||||||||||
Sbjct 805706 ATGCCCTCCTTGTC 805693
>seq62
Length=1271336
Score = 87.8 bits (96), Expect = 1e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576
|||| |||||||| || || ||||| || || | || |||||||| || || ||||| |
Sbjct 898281 CCTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGA 898340
Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
| || ||||| |||||||| || | |||||||||||| ||||||
Sbjct 898341 TCAATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTT 898386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314728813667765
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |