Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq93 190 5e-43 seq99 154 3e-32 seq62 116 9e-21 seq124 105 2e-17 >seq93 Length=1762202 Score = 190 bits (210), Expect = 5e-43 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| || || || |||||||| || ||||| || || || | || Sbjct 806107 TCCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAG 806048 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||||||| || |||||||| |||||||| |||||||||||||| ||||| | Sbjct 806047 GGTTCGTCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGAGGGAT 805988 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||||||||||| || ||||| ||||||||||| ||| ||| ||||| Sbjct 805987 GCCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAGGATTCTACCTC 805928 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 || ||||| |||||||| || || ||||| |||| Sbjct 805927 CAGGGTGATGGTCTTTCCAGTCAGGGTCTTGACAA 805893 Score = 167 bits (184), Expect = 5e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || |||||||||||||| ||||| |||||||||| ||| || Sbjct 805821 ACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAAAGAGT 805762 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||| |||||||| || |||||||| | |||||||||||| || |||| || Sbjct 805761 GCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGGAATGCC 805702 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || || || |||||||| || | ||||||||||| Sbjct 805701 CTCCTTGTCCTGAATCTTGCTCTTTACATTATCGATGGTATCGCTGGACTCAACCTCGAG 805642 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 ||||| ||||| || |||| Sbjct 805641 GGTGATGGTCTTGCCAGTGA 805622 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||| || |||||||| || || || || || || | ||||| Sbjct 806332 ACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGGGT 806273 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || ||||| |||| ||||| || ||||||||||| ||||| || || || || | || Sbjct 806272 TCTGCCATCCTCCAATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGGATACC 806213 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || || ||||| || ||||| ||||| ||||| || ||||||||| || Sbjct 806212 CTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACCTCAAG 806153 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| |||||||| || | ||||| || || | |||||| Sbjct 806152 AGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111 >seq99 Length=1752785 Score = 154 bits (170), Expect = 3e-32 Identities = 144/182 (79%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||| ||||| ||||| | ||||| || || |||||||| |||||||| Sbjct 456626 TTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATC 456567 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 |||||||||||||| || || | ||||||||||||||||||||| || ||||| ||| Sbjct 456566 AGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 456507 Query 211047 ATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 || ||||| ||| || |||||||| ||||| ||||| |||||||| ||||| || Sbjct 456506 ATAGTGTC---GCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTAACG 456450 Query 211104 AA 211105 || Sbjct 456449 AA 456448 >seq62 Length=1271336 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || ||||| || |||| |||||| | ||||| || || ||||| || || ||||| Sbjct 898283 TTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATC 898342 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || ||||| || || | ||| ||||||||||||||||| || ||||| ||| Sbjct 898343 AATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 898402 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || || | || ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 898403 ATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 898461 >seq124 Length=198120 Score = 105 bits (116), Expect = 2e-17 Identities = 192/277 (69%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTCT---GCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||| |||||||||||||| |||| ||||| ||||| ||||| || ||||| Sbjct 126041 GTTCTTCTGGTTGCTCTTTCTATTGCAA---GCATCCTTGTAGAGCATGAATGG-ATTCC 126096 Query 178150 CAC-CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTT 178208 || ||| | || ||| | | ||| | |||||| | ||| || || ||||| Sbjct 126097 CAGTCTCGGTCTGTGCCTCCAAGATGGAGTACCAAAGTTTCTGTGCCTTGATGGTCTTGC 126156 Query 178209 TGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACAT 178268 | || |||||| ||||||||| | ||| || ||||||| || |||||||||| Sbjct 126157 GACCCTTGCCTTCACGCTCGTACTTCTCGTATAGAGCCTCGAACTCATCACCATAGACAT 126216 Query 178269 CATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTC 178328 || | | || || ||| |||||||| | | | |||||| || | | || || | Sbjct 126217 CAGCCAAGCCTGGGCACTCGTTGGGGCACATCAAAGTCCACTCTCCATTCTTCTCAACAC 126276 Query 178329 GTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 | ||||||||||| |||| | |||| | ||| ||||| Sbjct 126277 GCTTCATGAAGAGATCAGGGATCCACAAGGCGTAGAA 126313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148955414825