Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq93 190 5e-43
seq99 154 3e-32
seq62 116 9e-21
seq124 105 2e-17
>seq93
Length=1762202
Score = 190 bits (210), Expect = 5e-43
Identities = 171/215 (80%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | ||||| || || || |||||||| || ||||| || || || | ||
Sbjct 806107 TCCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAG 806048
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | ||||||||| || |||||||| |||||||| |||||||||||||| ||||| |
Sbjct 806047 GGTTCGTCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGAGGGAT 805988
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|||||||||||||||||||| || ||||| ||||||||||| ||| ||| |||||
Sbjct 805987 GCCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAGGATTCTACCTC 805928
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104
|| ||||| |||||||| || || ||||| ||||
Sbjct 805927 CAGGGTGATGGTCTTTCCAGTCAGGGTCTTGACAA 805893
Score = 167 bits (184), Expect = 5e-36
Identities = 157/200 (79%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| || || |||||||||||||| ||||| |||||||||| ||| ||
Sbjct 805821 ACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAAAGAGT 805762
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || ||||| |||||||| || |||||||| | |||||||||||| || |||| ||
Sbjct 805761 GCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGGAATGCC 805702
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| ||||| || || || |||||||| || | |||||||||||
Sbjct 805701 CTCCTTGTCCTGAATCTTGCTCTTTACATTATCGATGGTATCGCTGGACTCAACCTCGAG 805642
Query 211073 AGTGATCGTCTTTCCCGTGA 211092
||||| ||||| || ||||
Sbjct 805641 GGTGATGGTCTTGCCAGTGA 805622
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| | ||| || |||||||| || || || || || || | |||||
Sbjct 806332 ACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGGGT 806273
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
|| ||||| |||| ||||| || ||||||||||| ||||| || || || || | ||
Sbjct 806272 TCTGCCATCCTCCAATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGGATACC 806213
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| || || ||||| || ||||| ||||| ||||| || ||||||||| ||
Sbjct 806212 CTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACCTCAAG 806153
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||| |||||||| || | ||||| || || | ||||||
Sbjct 806152 AGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111
>seq99
Length=1752785
Score = 154 bits (170), Expect = 3e-32
Identities = 144/182 (79%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||| ||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct 456626 TTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATC 456567
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|||||||||||||| || || | ||||||||||||||||||||| || ||||| |||
Sbjct 456566 AGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 456507
Query 211047 ATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103
|| ||||| ||| || |||||||| ||||| ||||| |||||||| ||||| ||
Sbjct 456506 ATAGTGTC---GCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTAACG 456450
Query 211104 AA 211105
||
Sbjct 456449 AA 456448
>seq62
Length=1271336
Score = 116 bits (128), Expect = 9e-21
Identities = 133/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| || ||||| || |||| |||||| | ||||| || || ||||| || || |||||
Sbjct 898283 TTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATC 898342
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || || ||||| || || | ||| ||||||||||||||||| || ||||| |||
Sbjct 898343 AATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 898402
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| || || | || ||||| |||||||| ||||| ||||| || ||||| || ||
Sbjct 898403 ATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 898461
>seq124
Length=198120
Score = 105 bits (116), Expect = 2e-17
Identities = 192/277 (69%), Gaps = 8/277 (3%)
Strand=Plus/Plus
Query 178093 GTTCTTTTGGTTGCTCTTTCT---GCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149
|||||| |||||||||||||| |||| ||||| ||||| ||||| || |||||
Sbjct 126041 GTTCTTCTGGTTGCTCTTTCTATTGCAA---GCATCCTTGTAGAGCATGAATGG-ATTCC 126096
Query 178150 CAC-CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTT 178208
|| ||| | || ||| | | ||| | |||||| | ||| || || |||||
Sbjct 126097 CAGTCTCGGTCTGTGCCTCCAAGATGGAGTACCAAAGTTTCTGTGCCTTGATGGTCTTGC 126156
Query 178209 TGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACAT 178268
| || |||||| ||||||||| | ||| || ||||||| || ||||||||||
Sbjct 126157 GACCCTTGCCTTCACGCTCGTACTTCTCGTATAGAGCCTCGAACTCATCACCATAGACAT 126216
Query 178269 CATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTC 178328
|| | | || || ||| |||||||| | | | |||||| || | | || || |
Sbjct 126217 CAGCCAAGCCTGGGCACTCGTTGGGGCACATCAAAGTCCACTCTCCATTCTTCTCAACAC 126276
Query 178329 GTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
| ||||||||||| |||| | |||| | ||| |||||
Sbjct 126277 GCTTCATGAAGAGATCAGGGATCCACAAGGCGTAGAA 126313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159148955414825
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |