Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq93 158 3e-33
seq99 120 7e-22
seq124 93.3 1e-13
>seq93
Length=1762202
Score = 158 bits (174), Expect = 3e-33
Identities = 149/190 (78%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || ||||| ||||| || || |||| |||||| |||| | |||| ||||||
Sbjct 806094 AGGACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTTCGTCCATCT 806035
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| ||||||||||| || |||||||||||||| || || |||||||||||
Sbjct 806034 TCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCC 805975
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| |||| ||| || || | ||||| |||
Sbjct 805974 TGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAGGATTCTACCTCCAGGGTGATGGTC 805915
Query 225682 TTGCCCGTCA 225691
|| || ||||
Sbjct 805914 TTTCCAGTCA 805905
Score = 145 bits (160), Expect = 2e-29
Identities = 151/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| || ||||||||||| ||||| |||| ||| ||||| | | |||
Sbjct 805821 ACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAAAGAGT 805762
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || ||||| |||||||| ||||||||||| | |||||||||||||| ||||| ||
Sbjct 805761 GCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGGAATGCC 805702
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| ||| ||| |||||||| || || || || || |
Sbjct 805701 CTCCTTGTCCTGAATCTTGCTCTTTACATTATCGATGGTATCGCTGGACTCAACCTCGAG 805642
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| |||||||| ||
Sbjct 805641 GGTGATGGTCTTGCCAGT 805624
Score = 136 bits (150), Expect = 9e-27
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|||||||| || || ||||| | ||||| ||| ||| || | ||||| || | |||
Sbjct 806541 TGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGACCATCCTCCAATTGC 806482
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| ||||| ||||| | ||| || ||||| || |||||||| ||||| || || ||||||
Sbjct 806481 TTACCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATACCCTCCTTATCCTGAATCTTT 806422
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||| ||| || ||||||||||| | ||||| || || ||||| |||||||| |||
Sbjct 806421 GACTTGACATTGTCAATGGTGTCTGACGACTCCACTTCCAATGTGATTGTCTTGCCAGTC 806362
Query 225691 AAAGTTTT 225698
||||| ||
Sbjct 806361 AAAGTCTT 806354
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| | ||| || ||||| || || || | |||||| || | || ||
Sbjct 806332 ACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGGGT 806273
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
||| ||||| || | ||||| || ||||||||||| ||||| || ||||| || |||||
Sbjct 806272 TCTGCCATCCTCCAATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGGATACC 806213
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| ||||| ||||| ||| || ||||| ||||| || | ||| || || |
Sbjct 806212 CTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACCTCAAG 806153
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || ||||| || || | ||| | |||||
Sbjct 806152 AGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111
>seq99
Length=1752785
Score = 120 bits (132), Expect = 7e-22
Identities = 125/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
||||||| ||||||||| || || | ||||| || || ||||| |||||||||||
Sbjct 456626 TTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATC 456567
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| |||||||||||||| || || ||||||||||| |||||||| ||| || |||
Sbjct 456566 AGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 456507
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||||| | ||||| || | ||||| |||||||||||
Sbjct 456506 ATAGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGT 456463
>seq124
Length=198120
Score = 93.3 bits (102), Expect = 1e-13
Identities = 188/274 (69%), Gaps = 4/274 (1%)
Strand=Plus/Plus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCAC-CTC 193558
||||||||| |||||| | | || || ||||||| ||||| || || |||| |||
Sbjct 126045 TTCTGGTTGCTCTTTCTATTGCAAGCATCCTTGTAGAGCATGAATGG-ATTCCCAGTCTC 126103
Query 193559 CGCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTT 193618
| || || | | ||| | |||||||| || || || | ||| | | ||||
Sbjct 126104 GGTCTGTGCCTCCAAGATGGAGTACCAAAGTTTCTGTGCCTTGATGGTCTTGCGACCCTT 126163
Query 193619 TCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTC-GTCGA 193677
||||| | ||||||||| ||||| || |||| || || | || |||| || | | |
Sbjct 126164 GCCTTCACGCTCGTACTTCTCGTATAGAGCCTCGAACTCATCACCATAGACATCAGCCAA 126223
Query 193678 GACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCA 193737
| | ||| || | || ||||| | | | |||| ||||||| | || || | |||||
Sbjct 126224 GCCTGGGCACT-CGTTGGGGCACATCAAAGTCCACTCTCCATTCTTCTCAACACGCTTCA 126282
Query 193738 TGAAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
||||||| |||| |||| | ||||||||| ||
Sbjct 126283 TGAAGAGATCAGGGATCCACAAGGCGTAGAAGAG 126316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192528067742270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |