Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq93 158 3e-33 seq99 120 7e-22 seq124 93.3 1e-13 >seq93 Length=1762202 Score = 158 bits (174), Expect = 3e-33 Identities = 149/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||| ||||| || || |||| |||||| |||| | |||| |||||| Sbjct 806094 AGGACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTTCGTCCATCT 806035 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||||||||| || |||||||||||||| || || ||||||||||| Sbjct 806034 TCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCC 805975 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| |||| ||| || || | ||||| ||| Sbjct 805974 TGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAGGATTCTACCTCCAGGGTGATGGTC 805915 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 805914 TTTCCAGTCA 805905 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| || ||||||||||| ||||| |||| ||| ||||| | | ||| Sbjct 805821 ACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAAAGAGT 805762 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| ||||||||||| | |||||||||||||| ||||| || Sbjct 805761 GCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGGAATGCC 805702 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| ||| |||||||| || || || || || | Sbjct 805701 CTCCTTGTCCTGAATCTTGCTCTTTACATTATCGATGGTATCGCTGGACTCAACCTCGAG 805642 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 805641 GGTGATGGTCTTGCCAGT 805624 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 |||||||| || || ||||| | ||||| ||| ||| || | ||||| || | ||| Sbjct 806541 TGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGACCATCCTCCAATTGC 806482 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| | ||| || ||||| || |||||||| ||||| || || |||||| Sbjct 806481 TTACCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATACCCTCCTTATCCTGAATCTTT 806422 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| || ||||||||||| | ||||| || || ||||| |||||||| ||| Sbjct 806421 GACTTGACATTGTCAATGGTGTCTGACGACTCCACTTCCAATGTGATTGTCTTGCCAGTC 806362 Query 225691 AAAGTTTT 225698 ||||| || Sbjct 806361 AAAGTCTT 806354 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| || ||||| || || || | |||||| || | || || Sbjct 806332 ACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGGGT 806273 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| || | ||||| || ||||||||||| ||||| || ||||| || ||||| Sbjct 806272 TCTGCCATCCTCCAATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGGATACC 806213 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||| ||||| ||| || ||||| ||||| || | ||| || || | Sbjct 806212 CTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACCTCAAG 806153 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || ||||| || || | ||| | ||||| Sbjct 806152 AGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111 >seq99 Length=1752785 Score = 120 bits (132), Expect = 7e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||||||| || || | ||||| || || ||||| ||||||||||| Sbjct 456626 TTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATC 456567 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || |||||||||||||| || || ||||||||||| |||||||| ||| || ||| Sbjct 456566 AGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 456507 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| | ||||| || | ||||| ||||||||||| Sbjct 456506 ATAGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGT 456463 >seq124 Length=198120 Score = 93.3 bits (102), Expect = 1e-13 Identities = 188/274 (69%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCAC-CTC 193558 ||||||||| |||||| | | || || ||||||| ||||| || || |||| ||| Sbjct 126045 TTCTGGTTGCTCTTTCTATTGCAAGCATCCTTGTAGAGCATGAATGG-ATTCCCAGTCTC 126103 Query 193559 CGCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTT 193618 | || || | | ||| | |||||||| || || || | ||| | | |||| Sbjct 126104 GGTCTGTGCCTCCAAGATGGAGTACCAAAGTTTCTGTGCCTTGATGGTCTTGCGACCCTT 126163 Query 193619 TCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTC-GTCGA 193677 ||||| | ||||||||| ||||| || |||| || || | || |||| || | | | Sbjct 126164 GCCTTCACGCTCGTACTTCTCGTATAGAGCCTCGAACTCATCACCATAGACATCAGCCAA 126223 Query 193678 GACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCA 193737 | | ||| || | || ||||| | | | |||| ||||||| | || || | ||||| Sbjct 126224 GCCTGGGCACT-CGTTGGGGCACATCAAAGTCCACTCTCCATTCTTCTCAACACGCTTCA 126282 Query 193738 TGAAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 ||||||| |||| |||| | ||||||||| || Sbjct 126283 TGAAGAGATCAGGGATCCACAAGGCGTAGAAGAG 126316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528067742270