Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq124 178 2e-39 seq93 122 1e-22 >seq124 Length=198120 Score = 178 bits (196), Expect = 2e-39 Identities = 416/624 (67%), Gaps = 4/624 (1%) Strand=Plus/Plus Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||| | || || || ||||| || | |||||| |||| || || || || || || Sbjct 126185 GTATAGAGCC--TCGAACTCATCACCATAGACATCAGCCAAGCCTGGGCACTCGTTGGGG 126242 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 |||||||| | |||||| |||| | || ||| || ||||| ||||||||||| ||||| Sbjct 126243 CACATCAAAGTCCACTCTCCATTCTTCTCAACACGCTTCATGAAGAGATCAGGGATCCAC 126302 Query 76628 AGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCT 76687 | || || ||||| || | || ||| || || || |||||| ||||| Sbjct 126303 AAGGCGTAGAAGAGATCACGAGCTCGGACTTCCTCTTTGCCGTGGTTCTTTCGGAGATCA 126362 Query 76688 AGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGT 76747 ||| |||| | | ||| | |||||||| || || || || || | | |||| |||| Sbjct 126363 AGGTACTCGAAGACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGTCTC 126422 Query 76748 TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATA 76807 || || || || || || | |||||||||||||| || | || | | ||| |||| Sbjct 126423 TTGTTGCCACCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGTAGCATGGGAACG 126482 Query 76808 ATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTA 76867 || ||||| || | || || ||||| | ||| || || |||||||| | Sbjct 126483 ATACCGTTGGAGTTTCCGTTCGTTCCCGCAATGTAGGCACCGGTAGCACGAATTCGGTGA 126542 Query 76868 ATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCA 76927 | | || || ||||| || || | || ||||| | || || |||||||| || Sbjct 126543 ACATTGAGACCGATTCCACCAGCATTCTTGGAGATCATGGCGCAAGTCTTCAATGTATCG 126602 Query 76928 TAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 76987 ||||| || || || ||||| || |||||| | ||| || || ||| | ||| Sbjct 126603 TAGATACCGTCAATGCTATCCTCTTTCATGTCGATAAGGAAGCATGAAGAGAGTTGTGCT 126662 Query 76988 TGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGT 77047 || || || || || || || || || ||||| ||||| || || | || | Sbjct 126663 TGTGGTGTACCGGCGGCGAATAAAGTTGGGGAAGCATGGGTGAAGCACTTCTGGGACATC 126722 Query 77048 AGATTGTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACG 77106 | |||||||| || || | || || ||||| || | ||||| || ||||| || || Sbjct 126723 AAGTTGTATGTCTCGATGGCAGCCTCAATATCTTCACCG-TGAATACCAACAGCCACTCG 126781 Query 77107 CATCAACATATGCTGAGGTCGTTC 77130 ||| | |||||| || || || || Sbjct 126782 CATAATCATATGTTGTGGGCGCTC 126805 >seq93 Length=1762202 Score = 122 bits (134), Expect = 1e-22 Identities = 297/444 (67%), Gaps = 6/444 (1%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||||||||| ||||| ||||| |||||||| || || || || || | | ||| || || Sbjct 1532406 TTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGTGAGATGTT 1532347 Query 46398 TTCCATAAAATCAAACGGATTAG-TAACATTATAAAtttttttAAATCCTAATTCTGAAA 46456 ||||| || || || || || | | || || || | || | || | | || Sbjct 1532346 CTCCATGAAGTCGAATGGGTTGGCTGAC-TTGTAGACCTTCTCGTTGCCAAGAGCAACAA 1532288 Query 46457 TCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGA 46516 || | ||| |||||||| || || || ||||| | | | ||||| || | || Sbjct 1532287 GGAGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCGAGGA 1532228 Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTA 46576 || | || |||||||| || | ||||| || ||||| ||||| || | || | Sbjct 1532227 GTGCGCAAGGAAGAGCCTCGGTCAAGAACTCCTGCTCAATCTCAACAGCCTCGGTAATGA 1532168 Query 46577 TCGATGTT--ACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGC 46634 || | || || | || || ||||| | ||| ||||||| || | | || || Sbjct 1532167 -CG-TCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAATGAGAGAAGAGAAGGCAAGC 1532110 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 ||| || ||||| || || || | | || | ||||||||| || || || |||| Sbjct 1532109 AAAGTCGGTGTGAAGACCCTCGTCACGAGAGATAAGTTCGTTAGAGAAAGTCAGACCAGC 1532050 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 ||| || |||||||| || | ||| || |||| ||||| |||||| ||||| || || Sbjct 1532049 CATGAGACCACGCTTCTTTAACCAGAAGATAGATGCGAACGATCCACTGAAGAAGATACC 1531990 Query 46755 TTCTACAGCCGCGAATGCGACAAG 46778 || ||||| ||||||||||| || Sbjct 1531989 CTCGACAGCGGCGAATGCGACGAG 1531966 Score = 95.1 bits (104), Expect = 2e-14 Identities = 194/285 (68%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 ||||| || || | ||| ||| | || ||||||||||| || || ||||| || Sbjct 1531792 TATGTGTCGATGAGGAGAGAGTACGTCTCGGAATGAATGTTCTCCATCATGATCTGGAAG 1531733 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATT 47018 ||||| || || | || || | ||||| || || || ||| || || ||||| || Sbjct 1531732 CCGTAGAAGCAGCGAGCCTCGGGGATCTGAACTTCACCACTAAAGCGCTC-GACAAGGTT 1531674 Query 47019 CTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT 47078 ||| || || |||||||| ||| || || ||||| | || ||| || || || Sbjct 1531673 CTCGTTGACGATTCCATCTGAAGCGGCGAAGAATGCAAGAACGTGTGAGATGAAGTAACG 1531614 Query 47079 TTCATCGGTAGTCAG---TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 47135 |||||| | | || || |||||||| | || ||| || || | ||| | ||||| Sbjct 1531613 CTCATCGTCATTGAGCTTGTTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCTTC 1531554 Query 47136 AGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 || |||||||| || ||||| || || || ||||| | ||| || Sbjct 1531553 TGCGGTCCAGAAAGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 1531509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932573105600