Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq93 154 3e-32
seq62 138 2e-27
seq99 136 8e-27
seq141 98.7 2e-15
>seq93
Length=1762202
Score = 154 bits (170), Expect = 3e-32
Identities = 173/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
||||||||| || || || |||| ||| | || || ||||| |||||||||||
Sbjct 806566 ACCACCACGGAGACGGAGCACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCT 806507
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| || || |||||||| | ||| || || ||||||||||| || || |||||| |
Sbjct 806506 CAAG-GTACGACCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGTG 806448
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||||||||| || || ||||||| || || | || || ||||| || | || |
Sbjct 806447 GAATACCCTCCTTATCCTGAATCTTTGACTTGACATTGTCAATGGTGTCTGACGACTCCA 806388
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| | ||||| ||||| || ||||||||||| || || ||||||||
Sbjct 806387 CTTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 806339
Score = 152 bits (168), Expect = 1e-31
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || |||| || | ||| || || || || |||||||| |
Sbjct 806337 CCACCACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGAC 806278
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || | ||||||||| | ||| || ||||| ||||| | |||||| || || ||
Sbjct 806277 AGGGTTCTGCCATCCTCCAATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGG 806218
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||||||||| ||||| ||||| | || ||| | ||||| ||||| || | ||| ||
Sbjct 806217 ATACCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACC 806158
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 806157 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111
Score = 132 bits (146), Expect = 1e-25
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || || ||||| | ||| || || ||||| |||||||| |
Sbjct 806110 ACCTCCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 806051
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || ||||| || ||||| || || || ||||||| ||||||||||| ||
Sbjct 806050 GAGGGTTCGTCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGAGG 805991
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| || |||||||| |||||||| | || ||| | ||||| ||||| || | ||| ||
Sbjct 805990 GATGCCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAGGATTCTAC 805931
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
|| || ||||| ||||| || |||| ||||| ||
Sbjct 805930 CTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTGAC 805895
Score = 123 bits (136), Expect = 5e-23
Identities = 152/205 (74%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || || ||||| | ||| ||||| ||||| || || || |
Sbjct 805827 ACCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGA 805768
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||| || || || || || || || |||||||| ||||||||||| ||
Sbjct 805767 AAGAGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGG 805708
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| ||||||||||| || ||| ||||| ||||| ||||||| || || | || |
Sbjct 805707 AATGCCCTCCTTGTCCTGAATC-TTGCTCTTTACATTATCGATGGTATCGCTGGACTCAA 805649
Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075
| ||||| ||||| ||||| || ||
Sbjct 805648 CCTCGAGGGTGATGGTCTTGCCAGT 805624
Score = 118 bits (130), Expect = 2e-21
Identities = 160/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 230178 GTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAAT 230237
|||| | ||| |||||||| | ||| ||| |||||||| || ||||||||||
Sbjct 1532182 GTTGAGATTGAGCAGGAGTTCTTGACCGAGGCTCTTCCTTGCGCACTCCTCGGCATGAAC 1532241
Query 230238 GCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGG 230297
| | |||||| |||||| ||||| ||||| ||||||||| | | || || || ||
Sbjct 1532242 TCCAACCTCATGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTTGTTGCTCTTGGC 1532301
Query 230298 TACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAG 230357
||||||| || || || || ||||| |||| || |||||| ||| |||||
Sbjct 1532302 AACGAGAAGGTCTACAAGTCAGCCAACCCATTCGACTTCATGGAGAACATCTCACTTGCC 1532361
Query 230358 GGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAA 230400
|| || || ||||||||||| |||||||| | || || ||||
Sbjct 1532362 GGAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAAA 1532404
>seq62
Length=1271336
Score = 138 bits (152), Expect = 2e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| || ||||||||||| | ||| |||||||||||||| ||||| || || |||||||||
Sbjct 898283 TTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATC 898342
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || || ||||| || || ||||||||||| |||||||| | || ||| | |||
Sbjct 898343 AATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 898402
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| || || | ||||| || |||||||| ||||| ||||| | ||||| |||||
Sbjct 898403 ATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 898461
>seq99
Length=1752785
Score = 136 bits (150), Expect = 8e-27
Identities = 149/197 (76%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 282895 GATGTAAC-GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGT 282953
|||||| | || | | | |||||||||||||| || || || ||||||||||| |||
Sbjct 456644 GATGTATCTGTTCATACCTTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGT 456585
Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013
|| || || || ||||||| ||||||||||| || || || |||||||| ||||||
Sbjct 456584 TGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATC 456525
Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073
|| | || ||| | ||||||||||| | || || ||||| ||||| ||||| |||
Sbjct 456524 TTGGACTTGACGTTGTCGATAGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCC 456465
Query 283074 GTCAAAGTCTTAACGAA 283090
|| | |||||||||||
Sbjct 456464 GTGAGGGTCTTAACGAA 456448
>seq141
Length=29338
Score = 98.7 bits (108), Expect = 2e-15
Identities = 169/245 (69%), Gaps = 3/245 (1%)
Strand=Plus/Plus
Query 312486 CGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATCG 312545
|| |||||| | | | | |||||||| || | || | ||| | || || || || |
Sbjct 11217 CGTCCCCACATCAGAGCCTTGACAATGGAGGCAAAATTATCATCCATGACAATAATGGCA 11276
Query 312546 GCTGCTTCCTTTGCAATGTCTGTACC---ACTCCCCATTGCACACCCGACGTCTGCTTCC 312602
| |||||||||||| | || ||||| | | ||||| | | |||| ||| || |
Sbjct 11277 GATGCTTCCTTTGCGACCTCAGTACCTGCAATACCCATCGAGAAACCGATGTCAGCCATC 11336
Query 312603 TTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTCGATGCGACGACGTGGCCAAGGGCC 312662
||||| || || || ||||| | ||||| ||| || ||| || | ||||| ||
Sbjct 11337 TTAAGCGCAGGCGCATCGTTCGTGCCATCTCCAGTCACTGCAACCGTTTCTCCAAGCTCC 11396
Query 312663 TTCATGAGCTGAACCAACTTATACTTATCCTCTGGGGATGAACGGGCAAGAACTTTCAGC 312722
|||| ||| ||||| || ||||| ||||| ||||| ||||||||||||| |||
Sbjct 11397 TTCAATCGCTTCACCAAGATACGTTTATCTTCTGGAGATGATCGGGCAAGAACTTGAAGC 11456
Query 312723 TTAGG 312727
|||||
Sbjct 11457 TTAGG 11461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046736450674070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |