Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq93 154 3e-32 seq62 138 2e-27 seq99 136 8e-27 seq141 98.7 2e-15 >seq93 Length=1762202 Score = 154 bits (170), Expect = 3e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || || || |||| ||| | || || ||||| ||||||||||| Sbjct 806566 ACCACCACGGAGACGGAGCACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCT 806507 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || || |||||||| | ||| || || ||||||||||| || || |||||| | Sbjct 806506 CAAG-GTACGACCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGTG 806448 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||| || || ||||||| || || | || || ||||| || | || | Sbjct 806447 GAATACCCTCCTTATCCTGAATCTTTGACTTGACATTGTCAATGGTGTCTGACGACTCCA 806388 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | ||||| ||||| || ||||||||||| || || |||||||| Sbjct 806387 CTTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 806339 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || | ||| || || || || |||||||| | Sbjct 806337 CCACCACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGAC 806278 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||||||| | ||| || ||||| ||||| | |||||| || || || Sbjct 806277 AGGGTTCTGCCATCCTCCAATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGG 806218 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| ||||| ||||| | || ||| | ||||| ||||| || | ||| || Sbjct 806217 ATACCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACC 806158 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 806157 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || ||||| | ||| || || ||||| |||||||| | Sbjct 806110 ACCTCCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 806051 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || ||||| || || || ||||||| ||||||||||| || Sbjct 806050 GAGGGTTCGTCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGAGG 805991 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||||| | || ||| | ||||| ||||| || | ||| || Sbjct 805990 GATGCCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAGGATTCTAC 805931 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| ||||| || |||| ||||| || Sbjct 805930 CTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTGAC 805895 Score = 123 bits (136), Expect = 5e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || ||||| | ||| ||||| ||||| || || || | Sbjct 805827 ACCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGA 805768 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| || || || || || || || |||||||| ||||||||||| || Sbjct 805767 AAGAGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGG 805708 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| ||||||||||| || ||| ||||| ||||| ||||||| || || | || | Sbjct 805707 AATGCCCTCCTTGTCCTGAATC-TTGCTCTTTACATTATCGATGGTATCGCTGGACTCAA 805649 Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075 | ||||| ||||| ||||| || || Sbjct 805648 CCTCGAGGGTGATGGTCTTGCCAGT 805624 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 230178 GTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAAT 230237 |||| | ||| |||||||| | ||| ||| |||||||| || |||||||||| Sbjct 1532182 GTTGAGATTGAGCAGGAGTTCTTGACCGAGGCTCTTCCTTGCGCACTCCTCGGCATGAAC 1532241 Query 230238 GCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGG 230297 | | |||||| |||||| ||||| ||||| ||||||||| | | || || || || Sbjct 1532242 TCCAACCTCATGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTTGTTGCTCTTGGC 1532301 Query 230298 TACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAG 230357 ||||||| || || || || ||||| |||| || |||||| ||| ||||| Sbjct 1532302 AACGAGAAGGTCTACAAGTCAGCCAACCCATTCGACTTCATGGAGAACATCTCACTTGCC 1532361 Query 230358 GGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAA 230400 || || || ||||||||||| |||||||| | || || |||| Sbjct 1532362 GGAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAAA 1532404 >seq62 Length=1271336 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || ||||||||||| | ||| |||||||||||||| ||||| || || ||||||||| Sbjct 898283 TTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATC 898342 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || ||||| || || ||||||||||| |||||||| | || ||| | ||| Sbjct 898343 AATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 898402 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || || || | ||||| || |||||||| ||||| ||||| | ||||| ||||| Sbjct 898403 ATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 898461 >seq99 Length=1752785 Score = 136 bits (150), Expect = 8e-27 Identities = 149/197 (76%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 282895 GATGTAAC-GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGT 282953 |||||| | || | | | |||||||||||||| || || || ||||||||||| ||| Sbjct 456644 GATGTATCTGTTCATACCTTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGT 456585 Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || || ||||||| ||||||||||| || || || |||||||| |||||| Sbjct 456584 TGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATC 456525 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || | || ||| | ||||||||||| | || || ||||| ||||| ||||| ||| Sbjct 456524 TTGGACTTGACGTTGTCGATAGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCC 456465 Query 283074 GTCAAAGTCTTAACGAA 283090 || | ||||||||||| Sbjct 456464 GTGAGGGTCTTAACGAA 456448 >seq141 Length=29338 Score = 98.7 bits (108), Expect = 2e-15 Identities = 169/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 312486 CGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATCG 312545 || |||||| | | | | |||||||| || | || | ||| | || || || || | Sbjct 11217 CGTCCCCACATCAGAGCCTTGACAATGGAGGCAAAATTATCATCCATGACAATAATGGCA 11276 Query 312546 GCTGCTTCCTTTGCAATGTCTGTACC---ACTCCCCATTGCACACCCGACGTCTGCTTCC 312602 | |||||||||||| | || ||||| | | ||||| | | |||| ||| || | Sbjct 11277 GATGCTTCCTTTGCGACCTCAGTACCTGCAATACCCATCGAGAAACCGATGTCAGCCATC 11336 Query 312603 TTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTCGATGCGACGACGTGGCCAAGGGCC 312662 ||||| || || || ||||| | ||||| ||| || ||| || | ||||| || Sbjct 11337 TTAAGCGCAGGCGCATCGTTCGTGCCATCTCCAGTCACTGCAACCGTTTCTCCAAGCTCC 11396 Query 312663 TTCATGAGCTGAACCAACTTATACTTATCCTCTGGGGATGAACGGGCAAGAACTTTCAGC 312722 |||| ||| ||||| || ||||| ||||| ||||| ||||||||||||| ||| Sbjct 11397 TTCAATCGCTTCACCAAGATACGTTTATCTTCTGGAGATGATCGGGCAAGAACTTGAAGC 11456 Query 312723 TTAGG 312727 ||||| Sbjct 11457 TTAGG 11461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736450674070