Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq93 152 1e-31 seq99 145 2e-29 seq62 107 5e-18 >seq93 Length=1762202 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || || || ||||| || |||||||| ||||| ||| ||| ||||||||||| Sbjct 805895 GTCAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTAGAATCCTCCGACACCATCGAC 805954 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 ||||| || ||||| |||||||| ||||| |||||||| ||||| ||||| || ||| Sbjct 805955 AACGTTAAGTCGAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAACAACGCCTGATC 806014 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || || || |||||||||||| | || || |||| || || |||| || || Sbjct 806015 TTCGCTGGCAAGCAACTCGAAGATGGACGAACCCTCTCCGACTACAATATCCAGAAGGAG 806074 Query 178113 TCAACACTGCATCTTGT 178129 || || || ||||| || Sbjct 806075 TCCACCCTCCATCTCGT 806091 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| || | || |||||||| || || || Sbjct 805622 TCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCAGCGATACCATCGATAATGTAAAGA 805681 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||||| || || || || || ||||| ||||| | |||||||| |||| Sbjct 805682 GCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCTTGATCTTCGCTGGAA 805741 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| ||||| || | |||||| | |||||||| |||| ||||| || || || | Sbjct 805742 AGCAGCTTGAAGACGGCCGCACTCTTTCGGATTATAATATCCAGAAAGAGTCCACTCTCC 805801 Query 178123 ATCTTGT 178129 |||| || Sbjct 805802 ATCTCGT 805808 Score = 114 bits (126), Expect = 3e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| || ||||| || ||||| ||| || ||| Sbjct 806114 CAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTTGAATCATCCGAC 806173 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||| || || || || ||||| || || |||||| Sbjct 806174 ACAATCGACAACGTTAAGTCGAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAGCAA 806233 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || || | || ||||| || || || | || || || | Sbjct 806234 CGTCTTATCTTCGCCGGTAAGCAATTGGAGGATGGCAGAACCCTGTCAGACTACAATATT 806293 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 806294 CAGAAGGAGTCCACCCTGCA-CTTG 806317 Score = 100 bits (110), Expect = 7e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || ||||| | || ||||| |||||| Sbjct 806342 CAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACATTGGAAGTGGAGTCGTCAGAC 806401 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||| || || || || || || |||||||| Sbjct 806402 ACCATTGACAATGTCAAGTCAAAGATTCAGGATAAGGAGGGTATTCCACCTGACCAGCAG 806461 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||| | ||||| || || || || | || ||||| | || |||| ||| || ||| | Sbjct 806462 CGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTCGTAC-CTTGAGCGACTACAACAT 806520 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| || ||| Sbjct 806521 TCAAAAGGAGTCAACTCTCCAT 806542 >seq99 Length=1752785 Score = 145 bits (160), Expect = 2e-29 Identities = 148/192 (77%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAGACACC 177986 ||||| || || ||||| || || || ||||||||||||||||| ||| ||||| Sbjct 456448 TTCGTTAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGC---GACACT 456504 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| |||||||| ||||| |||||||| ||||||||||| || ||||| ||||| Sbjct 456505 ATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAACAACGC 456564 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || |||||||| || || || ||||| ||||| | || || |||||| ||| ||||| Sbjct 456565 CTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGAGCGATTACAACATCCAA 456624 Query 178107 AAAGAATCAACA 178118 || | || |||| Sbjct 456625 AAGGTATGAACA 456636 >seq62 Length=1271336 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || ||||| || ||||| || | || || ||| Sbjct 898461 TTCGTCAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGATACGATC 898402 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || |||||||| ||||| |||||||| || |||||||| ||||||||||| ||| | Sbjct 898401 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGATTG 898342 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || ||||| || || || ||||| | || ||| | || || ||| | || || Sbjct 898341 ATCTTTGCTGGAAAGCAACTTGAGGATGGCCGCACCCTTTCGGACTACAACATTCAGAA 898283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728038324770