Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq93 152 1e-31
seq99 145 2e-29
seq62 107 5e-18
>seq93
Length=1762202
Score = 152 bits (168), Expect = 1e-31
Identities = 152/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || || || || ||||| || |||||||| ||||| ||| ||| |||||||||||
Sbjct 805895 GTCAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTAGAATCCTCCGACACCATCGAC 805954
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
||||| || ||||| |||||||| ||||| |||||||| ||||| ||||| || |||
Sbjct 805955 AACGTTAAGTCGAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAACAACGCCTGATC 806014
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
||||| || || || |||||||||||| | || || |||| || || |||| || ||
Sbjct 806015 TTCGCTGGCAAGCAACTCGAAGATGGACGAACCCTCTCCGACTACAATATCCAGAAGGAG 806074
Query 178113 TCAACACTGCATCTTGT 178129
|| || || ||||| ||
Sbjct 806075 TCCACCCTCCATCTCGT 806091
Score = 131 bits (144), Expect = 4e-25
Identities = 141/187 (75%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || |||||||||||||| || | || |||||||| || || ||
Sbjct 805622 TCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCAGCGATACCATCGATAATGTAAAGA 805681
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
|||||||||||||| || || || || || ||||| ||||| | |||||||| ||||
Sbjct 805682 GCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCTTGATCTTCGCTGGAA 805741
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| ||||| || | |||||| | |||||||| |||| ||||| || || || |
Sbjct 805742 AGCAGCTTGAAGACGGCCGCACTCTTTCGGATTATAATATCCAGAAAGAGTCCACTCTCC 805801
Query 178123 ATCTTGT 178129
|||| ||
Sbjct 805802 ATCTCGT 805808
Score = 114 bits (126), Expect = 3e-20
Identities = 149/205 (73%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || ||||| || ||||| || ||||| ||| || |||
Sbjct 806114 CAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTTGAATCATCCGAC 806173
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||| || || || || ||||| || || ||||||
Sbjct 806174 ACAATCGACAACGTTAAGTCGAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAGCAA 806233
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||||||||| || || | || ||||| || || || | || || || |
Sbjct 806234 CGTCTTATCTTCGCCGGTAAGCAATTGGAGGATGGCAGAACCCTGTCAGACTACAATATT 806293
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || ||||| ||||
Sbjct 806294 CAGAAGGAGTCCACCCTGCA-CTTG 806317
Score = 100 bits (110), Expect = 7e-16
Identities = 145/202 (72%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||| | || || || || ||||| | || ||||| ||||||
Sbjct 806342 CAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACATTGGAAGTGGAGTCGTCAGAC 806401
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| |||||||||||| || || || || || || ||||||||
Sbjct 806402 ACCATTGACAATGTCAAGTCAAAGATTCAGGATAAGGAGGGTATTCCACCTGACCAGCAG 806461
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
||| | ||||| || || || || | || ||||| | || |||| ||| || ||| |
Sbjct 806462 CGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTCGTAC-CTTGAGCGACTACAACAT 806520
Query 178103 CCAAAAAGAATCAACACTGCAT 178124
||||| || ||||| || |||
Sbjct 806521 TCAAAAGGAGTCAACTCTCCAT 806542
>seq99
Length=1752785
Score = 145 bits (160), Expect = 2e-29
Identities = 148/192 (77%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAGACACC 177986
||||| || || ||||| || || || ||||||||||||||||| ||| |||||
Sbjct 456448 TTCGTTAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGC---GACACT 456504
Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046
||||| |||||||| ||||| |||||||| ||||||||||| || ||||| |||||
Sbjct 456505 ATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAACAACGC 456564
Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106
|| |||||||| || || || ||||| ||||| | || || |||||| ||| |||||
Sbjct 456565 CTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGAGCGATTACAACATCCAA 456624
Query 178107 AAAGAATCAACA 178118
|| | || ||||
Sbjct 456625 AAGGTATGAACA 456636
>seq62
Length=1271336
Score = 107 bits (118), Expect = 5e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || || || || || || ||||| || ||||| || | || || |||
Sbjct 898461 TTCGTCAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGATACGATC 898402
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| |||||||| ||||| |||||||| || |||||||| ||||||||||| ||| |
Sbjct 898401 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGATTG 898342
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||| || ||||| || || || ||||| | || ||| | || || ||| | || ||
Sbjct 898341 ATCTTTGCTGGAAAGCAACTTGAGGATGGCCGCACCCTTTCGGACTACAACATTCAGAA 898283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203728038324770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |