Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq93 125 7e-24 seq99 109 5e-19 seq62 100 3e-16 >seq93 Length=1762202 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||||||||| || || ||||||||| Sbjct 806109 CCTCCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAG 806050 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||| |||||||| ||||| |||||||| |||||||| | || Sbjct 806049 AGGGTTCGTCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGAGGG 805990 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||| |||| | | | |||||| || || || Sbjct 805989 ATGCCTTCCTTGTCCTGGATCTTCGACTT-AACGTTGTCGATGGTGTCGGAGGATTCTAC 805931 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 ||||| || || || || || ||||| ||||| || Sbjct 805930 CTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTGAC 805895 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| ||||| ||| |||||||||||| || ||||| || Sbjct 806338 GCCACCACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGA 806279 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || || | ||||| |||||||| || || || || || || | || Sbjct 806278 CAGGGTTCTGCCATCCTCCAATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGG 806219 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| | | ||| | || | | |||| | | | |||||| || || | Sbjct 806218 GATACCCTCCTTAT-CTTGAATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAA 806160 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || |||| ||||| ||||| |||||||| Sbjct 806159 CCTCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111 >seq99 Length=1752785 Score = 109 bits (120), Expect = 5e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| || ||||| || ||| ||||| || | || ||||| |||||||| ||||| | Sbjct 456628 CCTTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGA 456569 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||||||| |||||||| | || | | ||||||||| ||| || ||| | || | Sbjct 456568 TCAGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 456510 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||||||||||||||||||| | || || || || ||||| || ||||| ||| Sbjct 456509 TCGATAGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTAACG 456450 Query 41852 AA 41853 || Sbjct 456449 AA 456448 >seq62 Length=1271336 Score = 100 bits (110), Expect = 3e-16 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| ||||| || |||||||| | || || || ||||| || || || | Sbjct 898281 CCTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGA 898340 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||| ||||| ||||||| || | | |||||||||| ||| || ||| ||| | Sbjct 898341 TCAATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTG 898399 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | || ||||| ||||| ||||| | || || || || ||||| || ||||| ||| Sbjct 898400 TCGATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACG 898459 Query 41852 AA 41853 || Sbjct 898460 AA 898461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302815346000