Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq4 181 1e-40
seq6 107 2e-18
>seq4
Length=4310093
Score = 181 bits (200), Expect = 1e-40
Identities = 381/561 (68%), Gaps = 8/561 (1%)
Strand=Plus/Minus
Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163
|||||| | |||| | ||| | | | ||||| ||||| || |||| ||| ||||
Sbjct 3511142 TTCTTTCTTAGATTCAAGAAGTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCA 3511083
Query 54164 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223
| | | ||||| || ||||| || ||||| || | ||| | || || || || ||||
Sbjct 3511082 AAAGCACCAGGTCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAAACA 3511023
Query 54224 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 54283
| |||||| ||||| | ||||| |||| ||||| || || | || ||| ||| |
Sbjct 3511022 CGCAACATAGGAATGAGCCCATTTGATGTTCCATTAGTTCCTGCAATGTAGGAGCCAGTT 3510963
Query 54284 GCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGC 54341
||||| || | | ||||| |||| || || || || | || ||||| | || |
Sbjct 3510962 GCACGGATGCAGTGGGCATTGA--GACCGATGCCACCAGCGGTCTTGGAGATCATGGCAC 3510905
Query 54342 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 54401
| || | || |||||||||||||| || ||||||||| |||||| | | || |
Sbjct 3510904 AGGTCTTGAGTGTGTCATAGATGCCCTCGATGCTATCATCCTTCATGTCGATCAAGAAGC 3510845
Query 54402 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461
|| |||| ||| | | ||||| ||||| || | || || || || || ||||
Sbjct 3510844 AGGAGGACAGCTGGGGCTGTGGTGTTCCGGCATTGAAGAGCGTGGGTGACGCATGAGTAA 3510785
Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGA 54520
| || || | || | || ||||| ||||| || | || ||||| || | ||
Sbjct 3510784 AGCACTTCTGGGACATAAGGTTGTATGTCTCAATGGTCTTCTCAATATCGTCACCG-TGG 3510726
Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG-TTGTTTAT 54579
|| || || || |||||||| | ||||||||| |||| ||| ||| |||| ||| ||
Sbjct 3510725 ATACCAACAGCCACACGCATAATCATGTGCTGTGGTCGTTCGGCGA-CTTGCTTGCCGAT 3510667
Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639
|||||||| ||| || || ||||| || || |||||||| || | ||| ||||| |
Sbjct 3510666 TTTCAGCAGGTATGACTTCTCCAACGTCTTGAAACCAAAGTATTGGTAGTTGAAGTCCCT 3510607
Query 54640 TTCGTAAATAATAACTGAGTT 54660
||||| | ||| | |||||
Sbjct 3510606 GTCGTAGACAATGGCCGAGTT 3510586
>seq6
Length=3486194
Score = 107 bits (118), Expect = 2e-18
Identities = 216/320 (68%), Gaps = 3/320 (1%)
Strand=Plus/Minus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
||||| ||||| ||| | ||||| || | | || | ||| || ||||| |||||
Sbjct 2268700 CATGCAAAATCTGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTTGAAAAGGTGAGA 2268641
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254
|| ||||| ||||| | || ||||| || || | ||||||||||||||||||||
Sbjct 2268640 CCAGGCATCAGGCCCTTGCTCTTGAGCCAGAAAATCGCAGCAAATGATCCAGAAAAGAAG 2268581
Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGT 24311
|| || || || || || || |||| |||| || | || || | | |||
Sbjct 2268580 ATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCGAAAGTGGACTCCTTATCAGAG 2268521
Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371
||||| | ||||||| ||||||||||| | ||||| || || || |||||||
Sbjct 2268520 ATCCATCTAAGAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTGTCGATAGCATCG 2268461
Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431
|| || ||| | || || || ||| | || ||||| || || | || ||||||
Sbjct 2268460 AACAGGTAGGTCTTCTCTTTGGGATCGCTCACGTATGTGTCGATGAGGAGTGAATACATC 2268401
Query 24432 TCCGAATGAATGTTTTCAAT 24451
|| || || ||||| || ||
Sbjct 2268400 TCGGAGTGGATGTTCTCCAT 2268381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721503520240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |