Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq6 168 7e-37
seq5 141 1e-28
seq1 114 1e-20
>seq6
Length=3486194
Score = 168 bits (186), Expect = 7e-37
Identities = 343/505 (68%), Gaps = 16/505 (3%)
Strand=Plus/Plus
Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCG 116929
||||||||| | ||||| || |||||||| |||||||||||| |||||| || | |
Sbjct 2268381 ATGGAGAACATCCACTCCGAGATGTATTCACTCCTCATCGACACATACGTGAGCGATCCC 2268440
Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989
| |||||| | |||| | || ||||| || || || ||| || ||||||||
Sbjct 2268441 AAAGAGAAGACCTACCTGTTCGATGCTATCGACACCATCCCTTGCATCCGCAAGAAGGCC 2268500
Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049
|| ||||| || | |||||| | | | ||| || | |||| | || ||||| ||
Sbjct 2268501 GACTGGGCTCTTAGATGGATCTCTGATAAGGAGTCCACTTTCGCTCAACGACTGGTTGCT 2268560
Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109
||||| ||||||||||| |||||||||| || || || || || || |||||||||
Sbjct 2268561 TTCGCAGCCGTCGAGGGTATCTTCTTTTCTGGATCATTTGCTGCGATTTTCTGGCTCAAG 2268620
Query 117110 AAACGCGGCCTCATGCCCGGCCTGAC--TTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
| ||||| ||||| || || || ||||| || || |||||||| | || ||||
Sbjct 2268621 AGCAAGGGCCTGATGCCTGGTCTCACCTTTTCA--AATGAACTCATCTCTCGTGATGAGG 2268678
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227
| |||| || ||||| || | || | | ||| | ||| | ||| ||
Sbjct 2268679 GCATGCACACAGATTTTGCATGCCTCCTCCTGCAACATCTCAAGCA-----CAAGCCCGA 2268733
Query 117228 CGC---GCGTCAGGGAGA---TCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
| | || ||| |||| || ||| ||| || ||||| || || | || || |
Sbjct 2268734 CCCAAAGC-TCATTGAGAATGTCATCATCGAAGCAGTCGCTATTGAAAAAGAGTTTCTAA 2268792
Query 117282 CCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCG 117341
| |||||||| || || || ||||||| | || | | | |||| || ||||| |
Sbjct 2268793 CTGAAGCGCTCCCTGTCGGTTTGCTGGGCATGAACTCCAAGCTCATGTGCCAGTACATTG 2268852
Query 117342 AGTTCGTCGCCGACAGGCTGCTGCT 117366
|||| ||||||||| || |||||||
Sbjct 2268853 AGTTTGTCGCCGACCGGTTGCTGCT 2268877
Score = 91.5 bits (100), Expect = 2e-13
Identities = 156/223 (70%), Gaps = 5/223 (2%)
Strand=Plus/Plus
Query 116638 GTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTC 116697
|||| |||||||||| || ||||| || ||||| | || || || ||||||||
Sbjct 2268094 GTGGAACATGTACAAACGTGCTGAGGCTAGCTTTTGGACAGCAGAAGAAGTCGACCTGTC 2268153
Query 116698 CAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754
|| ||| | ||| ||| | || ||||| | | || ||| | ||| || ||
Sbjct 2268154 GAAAGACCTGCACGATTGGCACAACCGACTGAACAATGATGAACGCTACTTCGTCTCCCA 2268213
Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814
|| || || || ||||| || |||||||| ||||||||||| ||| | ||||||||
Sbjct 2268214 TGTCCTTGCTTTCTTCGCTGCTTCAGACGGCATTGTCAACGAGAACCTGCTGGAGCGTTT 2268273
Query 116815 C-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGG 116856
| || | || |||||||| | || ||||| || ||||||||
Sbjct 2268274 CAGCGC-CGAAGTGCAGGTACCTGAAGCGCGCTGTTTCTACGG 2268315
>seq5
Length=3889323
Score = 141 bits (156), Expect = 1e-28
Identities = 159/210 (76%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||||||||| || ||||| | || |||||| || |
Sbjct 1366576 ATGCAAATCTTCGTGAAGACCCTCACGGGCAAGACTATCACGCTAGAGGTCGAATCCTCG 1366635
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | || |||| ||||| ||||||| ||||| ||||| ||||| | |||||
Sbjct 1366636 GATACAATTGACAACG-TCAAGTCGAAAATTCAAGACAAGGAGGGTATCCCACCCGACCA 1366694
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||| | |||| ||| ||||| ||||| || |||| || || ||| ||||||||
Sbjct 1366695 GCAGCGATTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTCTCAGACTACAA 1366754
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| |||| || ||||| ||
Sbjct 1366755 CATCCAGAAGGAATCCACCCTCCATCTCGT 1366784
Score = 120 bits (132), Expect = 3e-22
Identities = 155/213 (73%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 40681 CTCCGAAAA-ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGT 40739
||||| || ||||| || ||||| || || ||||| ||||| || |||||| | || ||
Sbjct 1366110 CTCCGCAATCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAGGT 1366169
Query 40740 CGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCC 40799
|| | | ||||| | | | | ||||| || || | ||||| || ||||| ||
Sbjct 1366170 TGAGTCGAGCGACACCATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAAGGCATTCC 1366229
Query 40800 CGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 40859
| || ||||| || ||||||| ||| || |||||||| || || | |||||||| |
Sbjct 1366230 TCCTGATCAGCAGCGCCTCATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTGAG 1366289
Query 40860 CGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||| |||||||||||||| ||| | || |||||
Sbjct 1366290 CGATTACAACATCCAGAAAGAGTCGACACTGCA 1366322
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| ||||| || | || || || | |
Sbjct 1366804 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACATTGGAAGTTGAGAGCTCA 1366863
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| ||||||||||| | ||||||
Sbjct 1366864 GACACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCCGACCAG 1366923
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| ||||| || |||| || || || ||||||||||
Sbjct 1366924 CAGAGATTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGAACGCTGTCCGACTACAAC 1366983
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| ||||||||| ||| |||| || ||| || | || | |||||
Sbjct 1366984 ATTCAGAAGGAGAGCACTTTGCACCTGGTGCTGAGACTGCGTGGCGG 1367030
>seq1
Length=6061779
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || ||||||||||| ||||||||| |||| |||||| || | |||| |
Sbjct 4126399 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAATCCTCAGACACAATC 4126340
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | |||| || || | ||||| ||||||||||| | |||||||| |||||
Sbjct 4126339 GACAATGTCAAATCCAAGATCCAAGACAAGGAGGGCATCCCACCCGACCAGCAGCGACTG 4126280
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| || || || |||| || || | | ||||||||| ||||| |||
Sbjct 4126279 ATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACGTTGAGCGACTACAATATCCAAAAG 4126220
Query 40879 G 40879
|
Sbjct 4126219 G 4126219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219116276880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |