Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6 168 7e-37 seq5 141 1e-28 seq1 114 1e-20 >seq6 Length=3486194 Score = 168 bits (186), Expect = 7e-37 Identities = 343/505 (68%), Gaps = 16/505 (3%) Strand=Plus/Plus Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCG 116929 ||||||||| | ||||| || |||||||| |||||||||||| |||||| || | | Sbjct 2268381 ATGGAGAACATCCACTCCGAGATGTATTCACTCCTCATCGACACATACGTGAGCGATCCC 2268440 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 | |||||| | |||| | || ||||| || || || ||| || |||||||| Sbjct 2268441 AAAGAGAAGACCTACCTGTTCGATGCTATCGACACCATCCCTTGCATCCGCAAGAAGGCC 2268500 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||| || | |||||| | | | ||| || | |||| | || ||||| || Sbjct 2268501 GACTGGGCTCTTAGATGGATCTCTGATAAGGAGTCCACTTTCGCTCAACGACTGGTTGCT 2268560 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 ||||| ||||||||||| |||||||||| || || || || || || ||||||||| Sbjct 2268561 TTCGCAGCCGTCGAGGGTATCTTCTTTTCTGGATCATTTGCTGCGATTTTCTGGCTCAAG 2268620 Query 117110 AAACGCGGCCTCATGCCCGGCCTGAC--TTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 | ||||| ||||| || || || ||||| || || |||||||| | || |||| Sbjct 2268621 AGCAAGGGCCTGATGCCTGGTCTCACCTTTTCA--AATGAACTCATCTCTCGTGATGAGG 2268678 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 | |||| || ||||| || | || | | ||| | ||| | ||| || Sbjct 2268679 GCATGCACACAGATTTTGCATGCCTCCTCCTGCAACATCTCAAGCA-----CAAGCCCGA 2268733 Query 117228 CGC---GCGTCAGGGAGA---TCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 | | || ||| |||| || ||| ||| || ||||| || || | || || | Sbjct 2268734 CCCAAAGC-TCATTGAGAATGTCATCATCGAAGCAGTCGCTATTGAAAAAGAGTTTCTAA 2268792 Query 117282 CCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCG 117341 | |||||||| || || || ||||||| | || | | | |||| || ||||| | Sbjct 2268793 CTGAAGCGCTCCCTGTCGGTTTGCTGGGCATGAACTCCAAGCTCATGTGCCAGTACATTG 2268852 Query 117342 AGTTCGTCGCCGACAGGCTGCTGCT 117366 |||| ||||||||| || ||||||| Sbjct 2268853 AGTTTGTCGCCGACCGGTTGCTGCT 2268877 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 116638 GTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTC 116697 |||| |||||||||| || ||||| || ||||| | || || || |||||||| Sbjct 2268094 GTGGAACATGTACAAACGTGCTGAGGCTAGCTTTTGGACAGCAGAAGAAGTCGACCTGTC 2268153 Query 116698 CAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || ||| | ||| ||| | || ||||| | | || ||| | ||| || || Sbjct 2268154 GAAAGACCTGCACGATTGGCACAACCGACTGAACAATGATGAACGCTACTTCGTCTCCCA 2268213 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 || || || || ||||| || |||||||| ||||||||||| ||| | |||||||| Sbjct 2268214 TGTCCTTGCTTTCTTCGCTGCTTCAGACGGCATTGTCAACGAGAACCTGCTGGAGCGTTT 2268273 Query 116815 C-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGG 116856 | || | || |||||||| | || ||||| || |||||||| Sbjct 2268274 CAGCGC-CGAAGTGCAGGTACCTGAAGCGCGCTGTTTCTACGG 2268315 >seq5 Length=3889323 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||||||||| || ||||| | || |||||| || | Sbjct 1366576 ATGCAAATCTTCGTGAAGACCCTCACGGGCAAGACTATCACGCTAGAGGTCGAATCCTCG 1366635 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | || |||| ||||| ||||||| ||||| ||||| ||||| | ||||| Sbjct 1366636 GATACAATTGACAACG-TCAAGTCGAAAATTCAAGACAAGGAGGGTATCCCACCCGACCA 1366694 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| ||| ||||| ||||| || |||| || || ||| |||||||| Sbjct 1366695 GCAGCGATTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTCTCAGACTACAA 1366754 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 1366755 CATCCAGAAGGAATCCACCCTCCATCTCGT 1366784 Score = 120 bits (132), Expect = 3e-22 Identities = 155/213 (73%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 40681 CTCCGAAAA-ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGT 40739 ||||| || ||||| || ||||| || || ||||| ||||| || |||||| | || || Sbjct 1366110 CTCCGCAATCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAGGT 1366169 Query 40740 CGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCC 40799 || | | ||||| | | | | ||||| || || | ||||| || ||||| || Sbjct 1366170 TGAGTCGAGCGACACCATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAAGGCATTCC 1366229 Query 40800 CGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 40859 | || ||||| || ||||||| ||| || |||||||| || || | |||||||| | Sbjct 1366230 TCCTGATCAGCAGCGCCTCATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTGAG 1366289 Query 40860 CGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||| |||||||||||||| ||| | || ||||| Sbjct 1366290 CGATTACAACATCCAGAAAGAGTCGACACTGCA 1366322 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||| || | || || || | | Sbjct 1366804 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACATTGGAAGTTGAGAGCTCA 1366863 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||||||||| | |||||| Sbjct 1366864 GACACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCCGACCAG 1366923 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| ||||| || |||| || || || |||||||||| Sbjct 1366924 CAGAGATTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGAACGCTGTCCGACTACAAC 1366983 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||||||| ||| |||| || ||| || | || | ||||| Sbjct 1366984 ATTCAGAAGGAGAGCACTTTGCACCTGGTGCTGAGACTGCGTGGCGG 1367030 >seq1 Length=6061779 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| |||| |||||| || | |||| | Sbjct 4126399 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAATCCTCAGACACAATC 4126340 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | |||| || || | ||||| ||||||||||| | |||||||| ||||| Sbjct 4126339 GACAATGTCAAATCCAAGATCCAAGACAAGGAGGGCATCCCACCCGACCAGCAGCGACTG 4126280 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| || || || |||| || || | | ||||||||| ||||| ||| Sbjct 4126279 ATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACGTTGAGCGACTACAATATCCAAAAG 4126220 Query 40879 G 40879 | Sbjct 4126219 G 4126219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219116276880