Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 342 5e-89 seq6 138 1e-27 seq5 118 9e-22 seq1 93.3 4e-14 >seq4 Length=4310093 Score = 342 bits (378), Expect = 5e-89 Identities = 1228/1902 (65%), Gaps = 51/1902 (3%) Strand=Plus/Minus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || || ||||| |||| | || || | ||||||| || || |||||| Sbjct 3512459 TCTTGGTCGACAGTGAACTGAATGGGTTGTGTAGCGGCCATGGTGCGGAGGTAGTACATG 3512400 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || || || |||||||| ||||| || ||| || || || || | ||| || | Sbjct 3512399 CCAGTTTTGAGACCCATTTTCCAGCCGGCAAAGTGCATGGATGTGATTTTGCCCATGGTG 3512340 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 || | || || | || || || || ||| ||||| || || || |||||||| Sbjct 3512339 GGTTCTTTCAAGTGGATGTTCAAGGATTGGGACTGGTCGATGAAGGCGCCCCGATCGGCC 3512280 Query 22283 GCCATATTTATCAATGTACGCATCGAC--ATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 ||||| | | | || || | | | |||||||| || |||||||||||| | ||| Sbjct 3512279 GCCATCTGGAGGATAGTTCG--TTGGCTGATTTCCCAGACAGTCTTGTACAGTGCCTTGA 3512222 Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 | || || || ||| |||| || || || | | ||||| || | Sbjct 3512221 TGTCGGCAGGGATGTTGGGGATGTTCTGAACCGAACCACCGTCGGCGATGATACGGTTCT 3512162 Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460 | || |||| ||| | ||| | || || ||| || | || |||| || | Sbjct 3512161 TCATGTTATCTGACCAGAGACCCAGATCGACCAGATCCTTCAAGAGCCACGGGTTGACGA 3512102 Query 22461 CTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAG 22520 | || ||||| || | || ||| || || ||| |||||||| || | || || || Sbjct 3512101 CCTGGAACTCACCAGCCAGGACACGACGGGAGTAGATGTTGGAAGTATATGGCTCAAAGC 3512042 Query 22521 ATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCG 22580 |||| ||||| || || ||||| | ||| || ||||| ||||| || || | || || | Sbjct 3512041 ATTCGTTGTTGCCAAGAATCTGGGAGGTTGACGCGGTAGGCATAGGAGCAACGAGGAGAG 3511982 Query 22581 AGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGA--GCATCGACCAGTCCCACAGATC 22638 |||| | | || | ||| | ||| | ||| | | || |||||||||||| || Sbjct 3511981 AGTTGCGAACACCATACTTGGCAATGTCGGCCTTCAAAGAGTC--CCAGTCCCACAGGTC 3511924 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC----GCGACTCGCCGGGC 22694 || || || ||||| |||||| || || || | || ||| | |||| |||| Sbjct 3511923 AGATGGGGTGACATT---CCACATGTCATACTGGAGCATGCCTTGTGAGACT----GGGC 3511871 Query 22695 TGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACG 22754 |||| |||||||| || || | || | | ||||| ||||| || | | Sbjct 3511870 TGCCCTCGTACGTCTCATATGTGCCTTGCTCCCTTGCAAGCTCGCACGAAGCAGTGAGAG 3511811 Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC----GGCGGCGGCGACGCTT 22810 | | | || || ||||| ||||| | |||| | || | | ||| || Sbjct 3511810 CCGCATGGTAGATGGTCTCAAAGATCTGGATGTTGAGTTGTCGAGCCTCCGGAGAG---- 3511755 Query 22811 TCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATC 22870 || | || | ||||| | ||| || || || | ||| ||||| || | || || Sbjct 3511754 TCAAAGGGAAGACGCAGAGCAAGGAAGGCATCTGCAAGACCTTGAACCCCAAGGCCAATA 3511695 Query 22871 GGTCGGTTTTTCAGATTCGACACTTTT--GCCTCGGGCAAAGGATACCAATTCGAATCGA 22928 ||||| | || ||| || ||| | ||||| || | ||||| | || |||| Sbjct 3511694 GGTCGATGGCGCATATT--ACTCTTCTTCGCCTCAGGGACGGGATAGTAGTTGATGTCGA 3511637 Query 22929 TTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGT 22988 | || ||||||| || | || || | || || | | ||||| | Sbjct 3511636 TGATTTTGTTCAAATTGCGTGTGACCACTTGAGTGACCTCATGAAGGCGACCGAAGTCAT 3511577 Query 22989 AAACGCCC---GATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGG 23045 | |||| ||||| | || || || | ||| | || || | |||||| || | Sbjct 3511576 ACTCGCCACGAGATTGGTCGACGAAGGTGGGAAGGGCCAGGGAAGCCAAATTGCAGACAG 3511517 Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTT--AT 23103 | ||||||||| | ||| |||| || || ||||| || ||||| | ||| || Sbjct 3511516 CAACCTCGTCTGGCGCAGTGAACTCGACGATCTCGGTGCAAAGATT--TGAGCTTCGAAT 3511459 Query 23104 CGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGG 23163 |||||||| || |||||||||| || | ||||| | |||||||||||||||||| || Sbjct 3511458 GGTGCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGTAGGG 3511399 Query 23164 CGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACG 23223 || || |||||| ||| | ||| | ||||| ||||| |||| || | || | Sbjct 3511398 AGTACCGGTCTCGGTCTGAGCCTCAAGAATCGCATACCACAGCTTCTGGGCCTTGACG-G 3511340 Query 23224 TCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGT 23282 || ||| | | ||| || | || || | | ||| | | | | ||| || | |||| Sbjct 3511339 TCTGACGGCCACGGCCCTCCTTTTCATATCTCTCGTAGAGCTCCTTAAACTCATCGCCGT 3511280 Query 23283 A-ACAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTCATT 23340 | ||| || ||||| || || | || ||| || || | ||| |||| || || Sbjct 3511279 AGACA-TCAGCCAGTCCTGGTGCTT-CATGAGGGCAGAAAAGAGTCCATTCCTGGTTCTT 3511222 Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 || || || ||| || | || || |||| | ||| |||||||| || ||||| || Sbjct 3511221 CTCGACACGCTCCATGAACAAGTCAGGGGTCCACATAGCATAGAACAGGTCACGGGCACG 3511162 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || || |||||| ||||||| | | || ||| ||||| || || || || ||||| Sbjct 3511161 GACTTCTTCCTTGCCGTGGTTCTTTCTTAGATTCAAGAAGTCAAAGACATCAGCGTGCCA 3511102 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 ||||| ||||| | |||||| || || |||| ||| ||||||||||| |||||||| || Sbjct 3511101 TGGCTCCAGGTAGATGGCAAAAGCACCAGGTCGCTTGTTGCCGCCCTGGTCGACGTAGCG 3511042 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 |||||| |||||| | || | | ||| || | ||| || || || | || || Sbjct 3511041 GGCCGTATTGTTGAAAACACGCAACATAGGAATGAGCCCATTTGATGTTCCATTAGTTCC 3510982 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | || || |||| || | | ||| | | || ||| ||||| || | | Sbjct 3510981 TGCAATGTAGGAGCCAGTTGCACGGATGCAGTGGGCATTGAGACCGATGCCACCAGCGGT 3510922 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| || || || || ||||| ||||||||||||||||| || || || Sbjct 3510921 CTTGGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATGCCCTCGATGCTATCATCCTT 3510862 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | ||| |||||| || || |||| || | | || || |||| ||| || || Sbjct 3510861 CATGTCGATCAAGAAGCAGGAGGACAGCTGGGGCTGTGGTGTTCCGGCATTGAAGAGCGT 3510802 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 || || || |||||| | | ||||| || ||||| || || |||| || Sbjct 3510801 GGGTGACGCATGAGTAAAGCACTTCTGGGACATAAGGTTGTATGTCTCAATGGTCTTCTC 3510742 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 ||| || || ||||| ||||| | || || ||||| ||||||| || |||| ||| | Sbjct 3510741 AATATCGTCACCGTGGATACCAACAGCCACACGCATAATCATGTGCTGTGGTCGTTCGGC 3510682 Query 23881 --CGTG-ACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 | || |||| ||||| | ||| ||||| | || ||| || || ||||| || Sbjct 3510681 GACTTGCTTGCCG---ATTTTCAGCAGGTATGACTTCTCCAACGTCTTGAAACCAAAGTA 3510625 Query 23938 GTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 | ||||| ||||| | |||| || |||||||| ||||| Sbjct 3510624 TTGGTAGTTGAAGTCCCTGTCGTAGACAATGGCCGAGTTCAA 3510583 >seq6 Length=3486194 Score = 138 bits (152), Expect = 1e-27 Identities = 332/495 (67%), Gaps = 18/495 (4%) Strand=Plus/Plus Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || || |||||||| || |||||||| || ||||||| || | Sbjct 2268381 ATGGAGAACATCCACTCCGAGATGTATTCACTCCTCATCGACACATACGTGAGCGATCCC 2268440 Query 57864 GACGAGAA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 | ||||| || || |||||| | || ||||| || || || ||| ||||||||| Sbjct 2268441 AAAGAGAAGACCTAC-CTGTTCGATGCTATCGACACCATCCCTTGCATCCGCAAGAAGGC 2268499 Query 57923 AGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978 || ||| | | | |||||| | ||| | |||| ||||| | | || Sbjct 2268500 CGACTGGGCTCTTAGATGGATCTCTGATAAGGA----GTCCACTTTCGCTCAACGACTGG 2268555 Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 | || ||||| |||||||| ||||| |||||||| || ||||| || || || ||| Sbjct 2268556 TTGCTTTCGCAGCCGTCGAGGGTATCTTCTTTTCTGGATCATTTGCTGCGATTTTCTGGC 2268615 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 | |||| ||||||||||| || || || ||| || || | || || || || | Sbjct 2268616 TCAAGAGCAAGGGCCTGATGCCTGGTCTCACCTTTTCAAATGAACTCATCTCTCGTGATG 2268675 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAA----TAAACCG 58154 |||| | || || |||||||| ||||| | || ||| | |||| | ||| Sbjct 2268676 AGGGCATGCACACAGATTTTGCATGCCT--CCTCCTGCAACA-TCTCAAGCACAAGCCCG 2268732 Query 58155 ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 || | | | ||| | | | |||| ||| || ||||| || ||||| |||||| | Sbjct 2268733 AC-CCAAAGCTCATTGAGAATGTCATCATCGAAGCAGTCGCTATTGAAAAAGAGTTTCTA 2268791 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 || ||||| || || || | |||| || |||||| | | |||| |||||||| Sbjct 2268792 ACTGAAGCGCTCCCTGTCGGTTTGCTGGGCATGAACTCCAAGCTCATGTGCCAGTACATT 2268851 Query 58275 GAGTTTGTTGCCGAC 58289 |||||||| |||||| Sbjct 2268852 GAGTTTGTCGCCGAC 2268866 >seq5 Length=3889323 Score = 118 bits (130), Expect = 9e-22 Identities = 160/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || ||||| || |||||| | || ||||| Sbjct 1366115 CAATCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTTGAGT 1366174 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGC 31304 || ||||| |||| | ||||| ||| || | | ||||||||||||| | || | Sbjct 1366175 CGAGCGACACCATCGACAATGTCAA---GAGCAAGATCCAGGACAAGGAAGGCATTCCTC 1366231 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | || |||||||| || || |||||||| |||||| | || || || |||||| Sbjct 1366232 CTGATCAGCAGCGCCTCATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTGAGCG 1366291 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| ||||| || ||||| ||||| || || |||| || Sbjct 1366292 ATTACAACATCCAGAAAGAGTCGACACTGCACTTGGTCCT 1366331 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || ||||| | || || ||| | || Sbjct 1366575 CATGCAAATCTTCGTGAAGACCCTCACGGGCAAGACTATCACGCTAGAGGTCGAATCCTC 1366634 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | ||||| || ||| |||||||| || | || |||||||| Sbjct 1366635 GGATACAATTGACAACGTCAAGTCGAAAATTCAAGACAAGGAGGGTATCCCACCCGACCA 1366694 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTAT 31369 |||||| | || ||||| ||||| ||| | || ||| | | || | | || || Sbjct 1366695 GCAGCGATTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTCTCA--GACTAC 1366752 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| || || ||||| || || ||||| | || |||| Sbjct 1366753 AACATCCAGAAGGAATCCACCCTCCATCTCGTTCTCAGACTTCGTGGTGGTA 1366804 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || || || | || ||||| || Sbjct 1366804 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACATTGGAAGTTGAGAGCTCA 1366863 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| ||| | || ||||||||| Sbjct 1366864 GACACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCCGACCAG 1366923 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| ||||| ||| | |||||| || || ||| || ||| Sbjct 1366924 CAGAGATTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGAACGCTGTCCGACTACAAC 1366983 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || ||| | || ||||| || |||||| | |||||| Sbjct 1366984 ATTCAGAAGGAGAGCACTTTGCACCTGGTGCTGAGACTGCGTGGCGGT 1367031 >seq1 Length=6061779 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || |||||| |||| || ||| | || |||| || Sbjct 4126399 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAATCCTCAGACACAATC 4126340 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | |||||| | || |||||||| ||| | || |||||||||||||| || Sbjct 4126339 GACAATGTCAAATCCAAGATCCAAGACAAGGAGGGCATCCCACCCGACCAGCAGCGACTG 4126280 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||| ||||| || | |||||| || ||||||| || || || ||||| Sbjct 4126279 ATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACGTTGAGCGACTACAATATCCAAAA 4126221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766327562960