Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4 120 6e-22 seq6 104 5e-17 >seq4 Length=4310093 Score = 120 bits (132), Expect = 6e-22 Identities = 181/255 (71%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || ||||| ||||||||||| || || ||| || || ||||| || ||| Sbjct 3510938 CCGATGCCACCAGCGGTCTTGGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATGCCC 3510879 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGT 94904 || ||||||||||| | | | | | | |||||| ||||| || ||||| |||| ||| Sbjct 3510878 TCGATGCTATCATCCTTCATGTCGATCAAGAAGCAGGAGGACAGCTGGGGCTGTG-GTGT 3510820 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 ||| ||| || || ||||| || ||||| ||||| | | | ||||| || | || Sbjct 3510819 TCCGGCATTGAAGAGCGTGGGTGACGCATGAGTAAAGCACTTCTGGGACATAAGGTTGTA 3510760 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||| |||||| | || || ||||| || || |||||||||||||||||||| Sbjct 3510759 TGTCTCAATGGTCTTCTCAATATCGTCACCGTGGATACCAACAGCCACACGCATAATCAT 3510700 Query 95025 GTCCTGAGGGCGCTC 95039 || ||| || || || Sbjct 3510699 GTGCTGTGGTCGTTC 3510685 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 93610 TACATGTTGGACGTTAAAGGCTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGTGGAT 93669 || |||||||| || | ||||||||| |||| |||||| || ||||| | || || Sbjct 3512069 TAGATGTTGGAAGTATATGGCTCAAAGCATTCGTTGTTGCCAAGAATCTGGGAGGTTGAC 3512010 Query 93670 GCAGTAGGCATGGGAGCAACAAACATTGAATTGTGAACACCATACTTCATAATGTC--CC 93727 || |||||||| |||||||| | | || ||| ||||||||||||| |||||| || Sbjct 3512009 GCGGTAGGCATAGGAGCAACGAGGAGAGAGTTGCGAACACCATACTTGGCAATGTCGGCC 3511950 Query 93728 TTC 93730 ||| Sbjct 3511949 TTC 3511947 >seq6 Length=3486194 Score = 104 bits (114), Expect = 5e-17 Identities = 224/333 (67%), Gaps = 9/333 (3%) Strand=Plus/Plus Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATT 101961 ||| || ||| | | ||||| || || || || || || ||||||||| ||| |||| Sbjct 2268539 TTTCGCTCAACGACTGGTTGCTTTCGCAGCCGTCGAGGGTATCTTCTTTTCTGGATCATT 2268598 Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || | ||||||||| |||||| || ||| | ||||||||||||||| || ||||| Sbjct 2268599 TGCTGCGATTTTCTGGCTCAAGAGCAAGGGCCTGATGCCTGGTCTCACCTTTTCAAATGA 2268658 Query 102022 GTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGG 102081 |||| ||| | || || || | || || ||||||||| | || || || | Sbjct 2268659 ACTCATCTCTCGTGATGAGGGCATGCACACAGATTTTGCATGCCTCCTCCTGCAACA-TC 2268717 Query 102082 TTTTGTTGATACCCCATCAAGAGAAAGGATTCTTGAAATTG---TCACTGAAGCCGTCCG 102138 | | | ||| | | || | | |||| | || ||| ||||| ||| Sbjct 2268718 TCAAGCACAAGCCCGACC-----CAAAGCTCATTGAGAATGTCATCATCGAAGCAGTCGC 2268772 Query 102139 AATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAA 102198 |||||| |||| ||||| || | | || ||||| || |||| ||||||| ||| Sbjct 2268773 TATTGAAAAAGAGTTTCTAACTGAAGCGCTCCCTGTCGGTTTGCTGGGCATGAACTCCAA 2268832 Query 102199 GTTGATGAGCCAGTACATTGAATTTGTGGCAGA 102231 | | ||| ||||||||||||| ||||| || || Sbjct 2268833 GCTCATGTGCCAGTACATTGAGTTTGTCGCCGA 2268865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583835172415