Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 194 2e-44 seq6 116 5e-21 >seq4 Length=4310093 Score = 194 bits (214), Expect = 2e-44 Identities = 384/561 (68%), Gaps = 8/561 (1%) Strand=Plus/Minus Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073 |||||| | |||| | ||| | | | ||||| ||||| || |||| ||| ||||| Sbjct 3511142 TTCTTTCTTAGATTCAAGAAGTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCA 3511083 Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 | | | || ||||| ||||| || ||||| || | ||| | || || || || |||| Sbjct 3511082 AAAGCACCAGGTCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAAACA 3511023 Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193 | |||||| ||||| | ||||| ||||| ||||| || || | || ||| ||| | Sbjct 3511022 CGCAACATAGGAATGAGCCCATTTGATGTTCCATTAGTTCCTGCAATGTAGGAGCCAGTT 3510963 Query 80194 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251 ||||| || | | ||||| |||| || || || || | || ||||| | || | Sbjct 3510962 GCACGGATGCAGTGGGCATTGA--GACCGATGCCACCAGCGGTCTTGGAGATCATGGCAC 3510905 Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311 | || | || |||||||||||||| ||||||||||| |||||| | | || | Sbjct 3510904 AGGTCTTGAGTGTGTCATAGATGCCCTCGATGCTATCATCCTTCATGTCGATCAAGAAGC 3510845 Query 80312 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 80371 || |||| ||| | | ||||| ||||| || | || || || || || |||| Sbjct 3510844 AGGAGGACAGCTGGGGCTGTGGTGTTCCGGCATTGAAGAGCGTGGGTGACGCATGAGTAA 3510785 Query 80372 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGA 80430 | || || | |||| || ||||| |||||||| | || ||||| || | || Sbjct 3510784 AGCACTTCTGGGACATAAGGTTGTATGTCTCAATGGTCTTCTCAATATCGTCACCG-TGG 3510726 Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG-TTATTTAT 80489 || || || || |||||||| | ||||||||| |||| ||| ||| |||| || || Sbjct 3510725 ATACCAACAGCCACACGCATAATCATGTGCTGTGGTCGTTCGGCGA-CTTGCTTGCCGAT 3510667 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 ||||| || ||| || || ||||| || || |||||||| || | ||| ||||| | Sbjct 3510666 TTTCAGCAGGTATGACTTCTCCAACGTCTTGAAACCAAAGTATTGGTAGTTGAAGTCCCT 3510607 Query 80550 TTCGTAAATAATAACCGAGTT 80570 ||||| | ||| ||||||| Sbjct 3510606 GTCGTAGACAATGGCCGAGTT 3510586 >seq6 Length=3486194 Score = 116 bits (128), Expect = 5e-21 Identities = 218/320 (68%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 ||||| ||||| ||||| ||||| || | | || ||||| || ||||| ||||| Sbjct 2268700 CATGCAAAATCTGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTTGAAAAGGTGAGA 2268641 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| ||||| | || ||||| || || | |||||||| |||||||||||| Sbjct 2268640 CCAGGCATCAGGCCCTTGCTCTTGAGCCAGAAAATCGCAGCAAATGATCCAGAAAAGAAG 2268581 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136 || || || || || || || ||||| |||| | | || ||| | | ||| Sbjct 2268580 ATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCGAAAGTGGACTCCTTATCAGAG 2268521 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| | ||||||| ||||||||||| | ||||| || || || || |||| Sbjct 2268520 ATCCATCTAAGAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTGTCGATAGCATCG 2268461 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 || || ||| | || || || ||| | || || || ||||| | || |||||| Sbjct 2268460 AACAGGTAGGTCTTCTCTTTGGGATCGCTCACGTATGTGTCGATGAGGAGTGAATACATC 2268401 Query 50257 TCCGAATGAATGTTTTCAAT 50276 || || || ||||| || || Sbjct 2268400 TCGGAGTGGATGTTCTCCAT 2268381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268683281320