Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 3e-14 >seq5 Length=3889323 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||||||| | ||||| || | |||||||||||| || | ||||| |||||| Sbjct 1367030 CCGCCACGCAGTCTCAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 1366971 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | || |||||||| || ||||||| ||| || |||| || Sbjct 1366970 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGG 1366911 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | ||||| || ||| ||||| ||| ||| || Sbjct 1366910 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTGTC-TGAGCTCTCAAC 1366852 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| | || || || || || ||||| Sbjct 1366851 TTCCAATGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||| | || | ||||| ||| ||||| || | ||||| || || Sbjct 1366802 CCACCACGAAGTCTGAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGAG 1366743 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | || |||||||| || ||||||||||| || |||| || Sbjct 1366742 AGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGGG 1366683 Query 43003 ACACCTTCTTTTTCGCTGA----TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTC 43058 | ||| || || || ||| || || ||||| || ||| ||| || | || Sbjct 1366682 ATACCCTCCTTGTC-TTGAATTTTCGAC---TTGACGTTGTCAATTGTATCCGAGGATTC 1366627 Query 43059 GACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| |||| ||| ||||| || || || || || ||||| || |||||||| Sbjct 1366626 GACCTCTAGCGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATTTGCAT 1366576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369539576754