Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq4 181 1e-40
seq6 116 5e-21
>seq4
Length=4310093
Score = 181 bits (200), Expect = 1e-40
Identities = 381/561 (68%), Gaps = 8/561 (1%)
Strand=Plus/Minus
Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156
|||||| | |||| | ||| | | | ||||| ||||| || |||| ||| |||||
Sbjct 3511142 TTCTTTCTTAGATTCAAGAAGTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCA 3511083
Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216
| | | || || || ||||| || ||||| || | ||| | || || || || ||||
Sbjct 3511082 AAAGCACCAGGTCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAAACA 3511023
Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276
| |||||| ||||| | ||||| |||| ||||| || || | || ||| ||| |
Sbjct 3511022 CGCAACATAGGAATGAGCCCATTTGATGTTCCATTAGTTCCTGCAATGTAGGAGCCAGTT 3510963
Query 72277 GCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 72334
||||| || | || ||||| |||| || || || || | || ||||| | || |
Sbjct 3510962 GCACGGATGCAGTGGGCATTGA--GACCGATGCCACCAGCGGTCTTGGAGATCATGGCAC 3510905
Query 72335 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394
| || | || |||||||||||||| || ||||||||| |||||| | | || |
Sbjct 3510904 AGGTCTTGAGTGTGTCATAGATGCCCTCGATGCTATCATCCTTCATGTCGATCAAGAAGC 3510845
Query 72395 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 72454
|| |||| ||| | | ||||| ||||| || | || || || || || ||||
Sbjct 3510844 AGGAGGACAGCTGGGGCTGTGGTGTTCCGGCATTGAAGAGCGTGGGTGACGCATGAGTAA 3510785
Query 72455 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGT 72513
| || || | |||| || ||||| |||||||| | || ||||| || | ||
Sbjct 3510784 AGCACTTCTGGGACATAAGGTTGTATGTCTCAATGGTCTTCTCAATATCGTCACCG-TGG 3510726
Query 72514 ATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG-TTATTTAT 72572
|| || || || |||||||| | ||| ||||| |||| ||| ||| |||| || ||
Sbjct 3510725 ATACCAACAGCCACACGCATAATCATGTGCTGTGGTCGTTCGGCGA-CTTGCTTGCCGAT 3510667
Query 72573 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 72632
||||| || ||| || || ||||| || || |||||||| || | ||| ||||| |
Sbjct 3510666 TTTCAGCAGGTATGACTTCTCCAACGTCTTGAAACCAAAGTATTGGTAGTTGAAGTCCCT 3510607
Query 72633 TTCGTAAATAATAACCGAATT 72653
||||| | ||| |||| ||
Sbjct 3510606 GTCGTAGACAATGGCCGAGTT 3510586
>seq6
Length=3486194
Score = 116 bits (128), Expect = 5e-21
Identities = 218/320 (68%), Gaps = 3/320 (1%)
Strand=Plus/Minus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
||||| ||||| ||||| |||||||| | | || | ||| || ||||| |||||
Sbjct 2268700 CATGCAAAATCTGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTTGAAAAGGTGAGA 2268641
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|| ||||| ||||| | || ||||| || || | |||||||||||||||||||||
Sbjct 2268640 CCAGGCATCAGGCCCTTGCTCTTGAGCCAGAAAATCGCAGCAAATGATCCAGAAAAGAAG 2268581
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGT 42241
|| || || || || || || |||| |||| | | || || | | |||
Sbjct 2268580 ATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCGAAAGTGGACTCCTTATCAGAG 2268521
Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301
||||| | ||||||| ||||||||||| | ||||| || || || || ||||
Sbjct 2268520 ATCCATCTAAGAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTGTCGATAGCATCG 2268461
Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361
|| || ||| | || || || ||| | || ||||| ||||| | || ||||||
Sbjct 2268460 AACAGGTAGGTCTTCTCTTTGGGATCGCTCACGTATGTGTCGATGAGGAGTGAATACATC 2268401
Query 42362 TCTGAATGAATGTTTTCAAT 42381
|| || || ||||| || ||
Sbjct 2268400 TCGGAGTGGATGTTCTCCAT 2268381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671139090939880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |