Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 159 5e-35 seq5 125 1e-24 >seq1 Length=6061779 Score = 159 bits (176), Expect = 5e-35 Identities = 161/207 (78%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| ||||| | || || ||||||||||| ||||| ||||| ||||| Sbjct 4260367 GCCAAGAGACATCGCAAGATCT-TGCGCGACAACATCCAAGGTATCACTAAGCCTGCTAT 4260425 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || ||||||||||| ||||||||| |||| | || |||| ||||||| Sbjct 4260426 CCGACGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCGGCCATGATCTACGAAGAGAC 4260485 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| ||||||| || | || |||| ||| || || ||| ||||| Sbjct 4260486 CCGTGGTGTCCTGAAGTCCTTCCTCGAGTCTGTCATCCGTGACGCCGTCACCTACACCGA 4260545 Query 16612 GCACGCTAAACGTAAGACTGTCACCTC 16638 ||||| || | ||||| |||||||| Sbjct 4260546 ACACGCAAAGAGAAAGACCGTCACCTC 4260572 >seq5 Length=3889323 Score = 125 bits (138), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||| | ||||||| ||| | | || || ||||||||||| ||||||||||| || | Sbjct 2697252 CGCGAAGAGACATCGCAAGATTT-TGCGTGACAACATCCAAGGTATCACCAAGCCTGCCA 2697310 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || | ||||| || || |||||||| ||||||||| |||| | || |||||||||||| Sbjct 2697311 TCAGACGTCTTGCCCGACGTGGTGGTGTCAAGCGTATCTCCGCCATGATCTATGAAGAGA 2697370 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | |||| |||||| | || |||| || || || ||| |||| Sbjct 2697371 CCCGAGGTGTCCTCAAGACCTTCCTTGAAGGTGTCATCCGAGACGCCGTCACCTACACCG 2697430 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTC 16638 | ||||| || | ||||| ||||| || Sbjct 2697431 AACACGCAAAGAGAAAGACCGTCACTTC 2697458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075188114009