Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10 140 2e-28 seq5 105 4e-18 seq11 86.0 4e-12 >seq10 Length=1966 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 397 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 338 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 337 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 303 >seq5 Length=3889323 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 || ||||| || | |||||||||||| ||||| ||||| || |||| || |||| Sbjct 1367016 CAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTTCGGCCGTC 1366957 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || ||||| || || | | || || |||| |||| ||| || ||||| Sbjct 1366956 TTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATGCCCTCCTTGTC 1366897 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | || ||| || |||||||| |||||||| || Sbjct 1366896 CTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCCAATGTAATGGT 1366837 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || |||||||| || ||||| |||||||| Sbjct 1366836 CTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804 >seq11 Length=1707 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||| |||| ||||||| ||||||||||||| Sbjct 135 CTCTCTTTTCAAAGTTCTTTTCATCTTTCGATCACTCTACTTGTGCGCTATCGGTCTCTG 76 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 75 GCCAATATTTAGCTTTA 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947146931803