Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq5 161 2e-34
seq1 143 5e-29
>seq5
Length=3889323
Score = 161 bits (178), Expect = 2e-34
Identities = 176/231 (76%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || |||||||| |||||||| ||||||
Sbjct 1366346 CCACCACGGAGACGGAGGACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGTAATCGCTC 1366287
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||| || || ||||| ||||| | || || || || |||
Sbjct 1366286 AGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGA 1366227
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
|||||||||||||| || ||||| |||||| ||||||||||| ||| || || ||
Sbjct 1366226 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTC-GCTCGACTCAAC 1366168
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || || ||||||||||||||||| |||||||| ||
Sbjct 1366167 CTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGAT 1366117
Score = 154 bits (170), Expect = 3e-32
Identities = 158/204 (77%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || || |||||||||||||| || || ||||| || || | || ||||| | |||
Sbjct 1366550 TGGAGAGTCGACTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCTTCAAGTTGC 1366491
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || ||||| | ||| || ||||| |||||||| ||||||||||| |||||
Sbjct 1366490 TTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTG 1366431
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
||||||| |||||||| || ||| || || || || | ||||||||| || || ||
Sbjct 1366430 CTCTTGACGTTGTCGATGGTATC-GCTCGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 1366372
Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461
||| ||||||||||| || |||||
Sbjct 1366371 GAGAGTCTTGACGAAGATTTGCAT 1366348
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || | || |||| ||| | ||| ||| || || ||||| || |||||
Sbjct 1367030 CCGCCACGCAGTCTCAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 1366971
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | |||||| |||||||| || | ||| || |||||||||||
Sbjct 1366970 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGG 1366911
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| || |||||||||| || |||
Sbjct 1366910 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAGCTCTCAACT 1366851
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||| || || || | |||||||||||| ||||||||
Sbjct 1366850 TCCAATGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804
Score = 145 bits (160), Expect = 1e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || ||||| || || |||||||| || || ||||| || | || || || | ||||
Sbjct 1366778 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCCTCAAGCTGC 1366719
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| |||||||| || | || || ||||||||||| || || |||||||||||||| ||
Sbjct 1366718 TTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGAATTTTC 1366659
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
| ||||||| || || || || | ||||| || || | ||||| || || ||||||
Sbjct 1366658 GACTTGACGTTGTCAATTGTATCCGAGGATTCGACCTCTAGCGTGATAGTCTTGCCCGTG 1366599
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
|||||||| ||||| || |||||
Sbjct 1366598 AGGGTCTTCACGAAGATTTGCAT 1366576
Score = 86.0 bits (94), Expect = 1e-11
Identities = 228/343 (66%), Gaps = 4/343 (1%)
Strand=Plus/Minus
Query 176187 AGCAGACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAG 176246
|| ||| |||||||||| | |||||| | | || || ||| || || | || |||
Sbjct 3468018 AGAAGAGGCTCGTCGGCTTGGTGGAAGAGCTTCCTGGCAAAGGGTGATAGGCGGGTAAAG 3467959
Query 176247 ATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGA 176306
||||| | ||| ||| ||| | ||||| || || | ||| ||||| ||
Sbjct 3467958 ATATAACGAGCGCTTGCAGAGTCACTTCCTCCCTGGTTTCGAGTACCAAATTGGCCTGAT 3467899
Query 176307 GGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCG 176366
|| ||||| |||||||| ||||| || ||| | ||| |||| ||||| || |
Sbjct 3467898 GGCTCAAGCAGGTTGATGTTGTTCGATCCGACGAAAGTTTGAGCCAAACCGACAATTGTC 3467839
Query 176367 CCCTGGAGAGACGCCTCGCCGTGGTGAT-AGCCGGCGTTCTCACTTGTGTATCCGGCAAA 176425
|| ||||| | |||||||||||||| ||| | | ||| ||| || || |
Sbjct 3467838 TGTTGAAGAGAAGTCTCGCCGTGGTGATAAGCGGTCATTC-CACCCACCAGACCCGCCAG 3467780
Query 176426 CTGCGCGACTTTGAT-TTCTTGTACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCC 176484
| |||||||| || | ||| | | ||||| ||||| || | ||| | ||| |
Sbjct 3467779 TTCAGCGACTTTCATATCCTTCTTC-AGGTTACGCTTAAAGCATGCATACATGACCTTTC 3467721
Query 176485 GCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACG 176527
|||| |||||| || || |||||||| || |||||||| ||
Sbjct 3467720 GCTGGCCGGGCTTTAGGCCGTCGACGACGGAAGGAATGGACCG 3467678
>seq1
Length=6061779
Score = 143 bits (158), Expect = 5e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|||||||| || || ||| | || | || ||||| | ||||| |||||||| ||
Sbjct 4126221 TTTTGGATATTGTAGTCGCTCAACGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATC 4126280
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|||| || ||||||||||| ||||| ||||||||||| ||||| | ||||| |||
Sbjct 4126281 AGTCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGATTTGACATTGTCG 4126340
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| ||||||| ||||| || || | ||||||||| || ||||||||||||||||||||
Sbjct 4126341 ATTGTGTCTGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 4126399
Score = 87.8 bits (96), Expect = 3e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573
|||||| ||||| || ||||||||| |||||| || ||||||||||| || || || ||
Sbjct 4858620 GAGCCAGGCCACATTCTTGACGTCCAAGTGGTTGGTGGGTTCGTCCAGGAGAAGAATATC 4858679
Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633
| ||| || | ||| || | || | || |||||| |||||||| ||||| |||||
Sbjct 4858680 GGGATCCTCGAACACGGCACGAGCAAGCGCCAACTTCATCTTCCAGCCACCGGAGAGGGA 4858739
Query 225634 G 225634
|
Sbjct 4858740 G 4858740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622250236360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |