Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5 161 2e-34 seq1 143 5e-29 >seq5 Length=3889323 Score = 161 bits (178), Expect = 2e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || |||||||| |||||||| |||||| Sbjct 1366346 CCACCACGGAGACGGAGGACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGTAATCGCTC 1366287 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || || ||||| ||||| | || || || || ||| Sbjct 1366286 AGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGA 1366227 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||||||||| || ||||| |||||| ||||||||||| ||| || || || Sbjct 1366226 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTC-GCTCGACTCAAC 1366168 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || || ||||||||||||||||| |||||||| || Sbjct 1366167 CTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGAT 1366117 Score = 154 bits (170), Expect = 3e-32 Identities = 158/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || |||||||||||||| || || ||||| || || | || ||||| | ||| Sbjct 1366550 TGGAGAGTCGACTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCTTCAAGTTGC 1366491 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || ||||| | ||| || ||||| |||||||| ||||||||||| ||||| Sbjct 1366490 TTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTG 1366431 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||||| |||||||| || ||| || || || || | ||||||||| || || || Sbjct 1366430 CTCTTGACGTTGTCGATGGTATC-GCTCGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 1366372 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||||||||| || ||||| Sbjct 1366371 GAGAGTCTTGACGAAGATTTGCAT 1366348 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || | || |||| ||| | ||| ||| || || ||||| || ||||| Sbjct 1367030 CCGCCACGCAGTCTCAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 1366971 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| |||||||| || | ||| || ||||||||||| Sbjct 1366970 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGG 1366911 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| || |||||||||| || ||| Sbjct 1366910 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAGCTCTCAACT 1366851 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| || || || | |||||||||||| |||||||| Sbjct 1366850 TCCAATGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || ||||| || || |||||||| || || ||||| || | || || || | |||| Sbjct 1366778 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCCTCAAGCTGC 1366719 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || |||||||| || | || || ||||||||||| || || |||||||||||||| || Sbjct 1366718 TTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGAATTTTC 1366659 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | ||||||| || || || || | ||||| || || | ||||| || || |||||| Sbjct 1366658 GACTTGACGTTGTCAATTGTATCCGAGGATTCGACCTCTAGCGTGATAGTCTTGCCCGTG 1366599 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 |||||||| ||||| || ||||| Sbjct 1366598 AGGGTCTTCACGAAGATTTGCAT 1366576 Score = 86.0 bits (94), Expect = 1e-11 Identities = 228/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 176187 AGCAGACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAG 176246 || ||| |||||||||| | |||||| | | || || ||| || || | || ||| Sbjct 3468018 AGAAGAGGCTCGTCGGCTTGGTGGAAGAGCTTCCTGGCAAAGGGTGATAGGCGGGTAAAG 3467959 Query 176247 ATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGA 176306 ||||| | ||| ||| ||| | ||||| || || | ||| ||||| || Sbjct 3467958 ATATAACGAGCGCTTGCAGAGTCACTTCCTCCCTGGTTTCGAGTACCAAATTGGCCTGAT 3467899 Query 176307 GGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCG 176366 || ||||| |||||||| ||||| || ||| | ||| |||| ||||| || | Sbjct 3467898 GGCTCAAGCAGGTTGATGTTGTTCGATCCGACGAAAGTTTGAGCCAAACCGACAATTGTC 3467839 Query 176367 CCCTGGAGAGACGCCTCGCCGTGGTGAT-AGCCGGCGTTCTCACTTGTGTATCCGGCAAA 176425 || ||||| | |||||||||||||| ||| | | ||| ||| || || | Sbjct 3467838 TGTTGAAGAGAAGTCTCGCCGTGGTGATAAGCGGTCATTC-CACCCACCAGACCCGCCAG 3467780 Query 176426 CTGCGCGACTTTGAT-TTCTTGTACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCC 176484 | |||||||| || | ||| | | ||||| ||||| || | ||| | ||| | Sbjct 3467779 TTCAGCGACTTTCATATCCTTCTTC-AGGTTACGCTTAAAGCATGCATACATGACCTTTC 3467721 Query 176485 GCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACG 176527 |||| |||||| || || |||||||| || |||||||| || Sbjct 3467720 GCTGGCCGGGCTTTAGGCCGTCGACGACGGAAGGAATGGACCG 3467678 >seq1 Length=6061779 Score = 143 bits (158), Expect = 5e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 |||||||| || || ||| | || | || ||||| | ||||| |||||||| || Sbjct 4126221 TTTTGGATATTGTAGTCGCTCAACGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATC 4126280 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 |||| || ||||||||||| ||||| ||||||||||| ||||| | ||||| ||| Sbjct 4126281 AGTCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGATTTGACATTGTCG 4126340 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||||| ||||| || || | ||||||||| || |||||||||||||||||||| Sbjct 4126341 ATTGTGTCTGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 4126399 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 |||||| ||||| || ||||||||| |||||| || ||||||||||| || || || || Sbjct 4858620 GAGCCAGGCCACATTCTTGACGTCCAAGTGGTTGGTGGGTTCGTCCAGGAGAAGAATATC 4858679 Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 | ||| || | ||| || | || | || |||||| |||||||| ||||| ||||| Sbjct 4858680 GGGATCCTCGAACACGGCACGAGCAAGCGCCAACTTCATCTTCCAGCCACCGGAGAGGGA 4858739 Query 225634 G 225634 | Sbjct 4858740 G 4858740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622250236360