Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 197 3e-45 seq6 140 6e-28 >seq4 Length=4310093 Score = 197 bits (218), Expect = 3e-45 Identities = 1010/1584 (64%), Gaps = 61/1584 (4%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGA- 243932 || ||| | ||| ||| |||||||| ||||| |||| || || ||||| || || Sbjct 3512325 GATGTTCAAGGATTGGGACTGGTCGATGAAGGCGCCCCGATCGGCCGCCATCTGGAGGAT 3512266 Query 243933 -GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAAC 243991 | || || ||| || || || |||||||| | | ||||| || | |||| Sbjct 3512265 AGTTCGTTGGCTGATTTCCCAGACA--GTCTTGTACAGTGCCTTGATGTCGGCAGGGATG 3512208 Query 243992 CCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTC 244051 ||||||||| ||||| || || | |||||| || | ||||||||| | Sbjct 3512207 TTGGGGATGTTCTGAACCGAACCACCGTCGGCGATGATACGGTTCTTCATGTTATCTGAC 3512148 Query 244052 CACAGGCCCA-AGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCC 244110 || || |||| | || |||| ||| | || | ||| || ||||| ||||| || Sbjct 3512147 CAGAGACCCAGATCGA-CCAGATCCTTCAAGAGCCACGGGTTGACGACCTGGAACTCACC 3512089 Query 244111 CGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCC 244170 | ||| || || || ||||| |||| | ||||| | || || ||||||| Sbjct 3512088 AGCCAGGACACGACGGGAGTAGATGTTGGAAGTATATGGCTCAAAGCATTCGTTGTTGCC 3512029 Query 244171 CAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCC 244230 || ||||| | || ||| || ||||| || | || || ||| ||| | || || Sbjct 3512028 AAGAATCTGGGAGGTTGACGCGGTAGGCATAGGAGCAACGAGGAGAGAGTTGCGAACACC 3511969 Query 244231 GTGCCTCTGGATG-CGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGC 244289 | | | ||| ||| | | | || ||||||||||| | | || || Sbjct 3511968 ATACTTGGCAATGTCGGCCT-TCAAAGAGTCCCAGTCCCACAGGTCAGATGGGG------ 3511916 Query 244290 GTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGG 244349 ||| |||||||||| |||| |||| || | ||| |||||||||||||| | Sbjct 3511915 ---TGACATTCCACATGTCATACTGGAGCATGCCTTGTGAGACTGGGCTGCCCTCGTACG 3511859 Query 244350 TCGGGTAGGGACCGT-CGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAG 244408 || || | || | | | || | | |||| || | ||| || || | |||| Sbjct 3511858 TCTCATATGTGCCTTGCTCCCTTG-CAAGCTCGCACGAAGCAGTGAGAGCCGCATGGTAG 3511800 Query 244409 ATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAG-GTGAAGGGGATGCC 244467 |||||||| |||||| |||| | | || |||| ||| || || || |||| | | Sbjct 3511799 ATGGTCTCAAAGATCTGGATGTTGAGTTGTCGAGCCT--CCGGAGAGTCAAAGGGAAGAC 3511742 Query 244468 CATCATCATG-AAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCT 244526 | || | ||| | || || || || || || || | ||| || |||| || ||| Sbjct 3511741 GCAGAGCAAGGAAGGCATCTGCAAGACCTTGAACCCCAAGGCCAATAGGTCGATGGCGCA 3511682 Query 244527 TGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGT 244586 | || | | || || || ||||| || ||||| |||||| | ||||| | | Sbjct 3511681 TATTACTCTTCTTCGCCTCAGGGACGGGATAGTAGTTGATGTCGATGATTTTGTTCAAAT 3511622 Query 244587 TGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCT 244646 |||| |||| || | ||| || || | ||||| |||||| || Sbjct 3511621 TGCGTGTGACCACTTGAGTGACCTCATGAAGGCGACCGAAGTCATACTCG-------CCA 3511569 Query 244647 CGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCA 244706 || ||| || || || || | ||||| | | |||| |||||||| || | Sbjct 3511568 CGA-GAT--TGGTCG--ACGAAGGTGGGAAGGGCCAGGGAAGCCAAATTGCAGACAGCAA 3511514 Query 244707 CCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTG--ATGGT 244764 |||| || | ||| ||| ||| ||||||||||| || || || ||| ||||| Sbjct 3511513 CCTCGTCTGGCGCAGTGAACTCGACGATCTCGGTGCAAAGATT--TGAGCTTCGAATGGT 3511456 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 ||||| || || || ||| ||| ||||||||| ||||||||||||||| |||| Sbjct 3511455 GCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGTAGGGAGT 3511396 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 ||||||||| ||| || | || | ||| | ||| || | | |||||||| ||| Sbjct 3511395 ACCGGTCTCGGTCTGAGCCTCAAGAATCGCA-TACCACAGCTTCTGGGCCTTGACGGTCT 3511337 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGA 244943 || | |||||| || || | ||| || ||| ||||| ||| ||| Sbjct 3511336 GACGGCCACGGCCCTCCTTTTCATATCTCTCGTAGAGCTCCTTAAACTCATCGCCGTAGA 3511277 Query 244944 CCTCGTCTAGGCCGGG-GCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTG 245002 | || | || || || || | | ||||| | ||| |||| || | | || | Sbjct 3511276 CATCAGCCAGTCCTGGTGCTTCATGA-GGGCAGAAAAGAGTCCATTCCTGGTTCTTCTCG 3511218 Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || | || |||||| | ||| ||| |||| | || | ||| ||||| | || | Sbjct 3511217 ACACGCTCCATGAACAAGTCAGGGGTCCACATAGCATAGAACAGGTCACGGGCACGGACT 3511158 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| ||| |||||| || || | ||| ||||||||||| || ||||||| ||| Sbjct 3511157 TCTTCCTTGCCGTGGTTCTTTCTTAGATTCAAGAAGTCAAAGACATCAGCGTGCCATGGC 3511098 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCG 245182 |||| ||||| || | || || || ||||||||||| |||||||| | | | || Sbjct 3511097 TCCAGGTAGATGGCAAAAGCACCAGGTCGCTTGTTGCCGCCCTGGTCGA----CGTAGCG 3511042 Query 245183 AGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCC 245238 || |||||| | |||| |||| | | || || || || || || || Sbjct 3511041 GGCCGTATTGTTGAAAACACGCAACATAGGAATGAGCCCATTTGATGTTCCATTAGTTCC 3510982 Query 245239 CTTGATGTAGGCGCC-CTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCG 245293 ||||||| ||| |||| | || ||| | ||| ||| || | || || Sbjct 3510981 TGCAATGTAGGAGCCAGTTGCAC----GGATGCAG-TGGGCATTGAGACCGATGCCACCA 3510927 Query 245294 GCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCC 245353 ||| ||||||||| | ||| ||| |||||| ||||| |||||||| ||||| || Sbjct 3510926 GCGGTCTTGGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATGCCCTCGATGCTATCA 3510867 Query 245354 GACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAAC 245413 |||||||| || || |||||||||||||||||||||| || | | | ||||| Sbjct 3510866 TCCTTCATGTCGATCAAGAAGCAGGAGGACAGCTGGGGCTGTGGTGTTCCGGCATTGAAG 3510807 Query 245414 AGAGTGGGGCTGGCGTGGGTAAAG 245437 || ||||| || || |||||| Sbjct 3510806 AGCGTGGGTGACGCATGAGTAAAG 3510783 >seq6 Length=3486194 Score = 140 bits (154), Expect = 6e-28 Identities = 345/518 (67%), Gaps = 14/518 (3%) Strand=Plus/Plus Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 |||||| | ||||||| | || |||||| | ||||| ||| |||| | ||| | Sbjct 2268359 GCTTCT-CAGCTTCCAAGTTATGATGGAGAACATCCACTCCGAGATGTATTC---ACTCC 2268414 Query 42571 TCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGA 42627 ||| |||| ||| | |||||| ||| | | |||||| | || || || | Sbjct 2268415 TCATCGACACATACGTGAGCGATCCCAAAGAGAAGACCTACCTGTTCGATGCTATCGACA 2268474 Query 42628 CGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG 42687 | || || |||||| |||||||| |||||||| || | |||||| | || Sbjct 2268475 CCATCCCTTGCATCCGCAAGAAGGCCGACTGGGCTCTTAGATGGATCTCTGATAAGGAGT 2268534 Query 42688 CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCG 42747 | || |||| | | ||||| || || | ||||||||||| |||||||| || || Sbjct 2268535 CCACTTTCGCTCAACGACTGGTTGCTTTCGCAGCCGTCGAGGGTATCTTCTTTTCTGGAT 2268594 Query 42748 CCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGA 42807 | || || | || |||||||||||| |||| |||||| || |||||||| || | Sbjct 2268595 CATTTGCTGCGATTTTCTGGCTCAAGAGCAAGGGCCTGATGCCTGGTCTCACCTTTTCAA 2268654 Query 42808 ACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGA 42867 | ||||||||| | || ||||| |||| | || ||||| ||||||| || | Sbjct 2268655 ATGAACTCATCTCTCGTGATGAGGGCATGCACACAGATTTTGCATGCCTCC---TCCTGC 2268711 Query 42868 GCCACCTCAGGCACAAGCCC--TCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGT 42925 || |||| |||||||||| | || ||| | | |||||| || || || Sbjct 2268712 AACATCTCAAGCACAAGCCCGACCCAA--AGCTCATTGAGAATGTCATCATCGAAGCAGT 2268769 Query 42926 GGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCA 42985 | || || || ||||| || || | |||| || || || | ||||||||| Sbjct 2268770 CGCTATTGAAAAAGAGTTTCTAACTGAAGCGCTCCCTGTCGGTTTGCTGGGCATGAACTC 2268829 Query 42986 CGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC 43023 | | ||||||||| ||||||| ||| |||||||||| Sbjct 2268830 CAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACC 2268867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339046544880