Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 158 3e-33 seq1 111 4e-19 >seq5 Length=3889323 Score = 158 bits (174), Expect = 3e-33 Identities = 177/233 (76%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || |||||||| | || |||||||||||||| |||| Sbjct 1366578 CATG-CCACCACGGAGACGGAGGACGAGATGGAGAGTCGACTCTTTTTGGATATTGTAGT 1366520 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| |||||||| | ||| ||||| || ||||| ||||| || ||| Sbjct 1366519 CGGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGTTGCTGATCGG 1366460 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 || || || || || || ||||| || ||| || ||||| || || | ||||||||| Sbjct 1366459 GAGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACGTTGTCGATGGTATCGCTCGAC 1366401 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 1366400 TCGACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 1366348 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || ||| || ||||| || || || | ||||| || |||||| Sbjct 1366310 TCTTTCTGGATGTTGTAATCGCTCAGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAG 1366251 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 || || ||||| ||| | || || ||||| || |||||||| || ||| || || || Sbjct 1366250 ATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTT-GCTCTTGACATT 1366192 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | |||||||| || || || || ||||| ||||| ||||| || |||||||| Sbjct 1366191 GTCGATGGTGTCGCTCGACTCAACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGAC 1366132 Query 288462 GAATATCTGCATTAT 288476 ||| |||||||| || Sbjct 1366131 GAAGATCTGCATGAT 1366117 Score = 114 bits (126), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || ||||| || || || || | ||||| || || || || || |||||| Sbjct 1367033 TGACCGCCACGCAGTCTCAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCG 1366974 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||| || |||||||| | || || || |||||||||| | ||| || | Sbjct 1366973 GACAGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGT 1366914 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||| || || || |||||||| |||| || || || || || | || |||| Sbjct 1366913 GGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAGCTC--- 1366857 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | || || ||||| ||||||| ||||||||||| |||||||| Sbjct 1366856 TCAACTTCCAATGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804 >seq1 Length=6061779 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||||||||| |||||| | ||| || |||||||| | ||| || || ||||||||| Sbjct 4126221 TTTTGGATATTGTAGTCGCTCAACGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATC 4126280 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || |||||| || || || || ||||| || | ||| || || || Sbjct 4126281 AGTCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGATTTGACATTGTCG 4126340 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || ||||| || ||||| ||||| ||||| || || || ||||||||||| Sbjct 4126341 ATTGTGTCTGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 4126399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654203513814