Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq5 116 4e-21
seq1 107 2e-18
>seq5
Length=3889323
Score = 116 bits (128), Expect = 4e-21
Identities = 156/216 (72%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055
|| ||||| ||||| ||||||||||| ||||| ||||| || | ||| || || ||||
Sbjct 1367016 CAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTTCGGCCGTC 1366957
Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
|| |||||||| || ||||| || | || ||||||||||| ||| | || |||||||||
Sbjct 1366956 TTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATGCCCTCCTTGTC 1366897
Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGAT 42172
| ||| || |||| | | | ||||| |||| || || || | || ||
Sbjct 1366896 CTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAGCTC---TCAACTTCCAATGTAAT 1366840
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| ||||| || | ||||| || ||||| |||||
Sbjct 1366839 GGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| |||| ||| ||| || || || |||||||| ||| || || | || ||
Sbjct 1366328 ACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGTAATCGCTCAGGGTGCGGCCATCCTCG 1366269
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
||||| ||||||||||| ||||| |||||||| || | || | || ||||||||| |
Sbjct 1366268 AGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 1366209
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
|| || |||| | | | ||||||||||| || || || | ||||| || |||
Sbjct 1366208 ATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCAACCTCAAGGGTGATTGTCTTG 1366149
Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || ||||| || ||||| |||||
Sbjct 1366148 CCGGTGAGGGTCTTGACGAAGATCTGCAT 1366120
Score = 111 bits (122), Expect = 2e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| ||||| |||||||| || | || || || |||| || || ||||| ||||| ||
Sbjct 1366539 CTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 1366480
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| || ||||| |||| || | || ||||||||| ||| || |||| |||
Sbjct 1366479 GATGAGACGTTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGA-CGT 1366421
Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | || |||||||| || || || | |||||||| ||||| || || ||||| |
Sbjct 1366420 TGTCGATGGTATCGCTCGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 1366361
Query 42196 CAAAGATTTGCAT 42208
| |||||||||||
Sbjct 1366360 CGAAGATTTGCAT 1366348
Score = 109 bits (120), Expect = 6e-19
Identities = 143/193 (74%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || ||||| || | || || || |||| || |||||||| || |||||
Sbjct 1366766 TCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 1366707
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
|| | |||||||||||||| ||| | | |||||||| | ||| |||| | |||| |||
Sbjct 1366706 ATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGT-CTTGAATTTTCGACTTGA-CGT 1366649
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | || || ||||| || || | |||||| || |||||||| || ||||| |
Sbjct 1366648 TGTCAATTGTATCCGAGGATTCGACCTCTAGCGTGATAGTCTTGCCCGTGAGGGTCTTCA 1366589
Query 42196 CAAAGATTTGCAT 42208
| |||||||||||
Sbjct 1366588 CGAAGATTTGCAT 1366576
>seq1
Length=6061779
Score = 107 bits (118), Expect = 2e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
||||||| |||||||| || || || || |||| || || ||||| || ||||| |
Sbjct 4126219 CCTTTTGGATATTGTAGTCGCTCAACGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGA 4126278
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| |||||||||||||||| ||| | || ||||||||| ||| || ||||| |
Sbjct 4126279 TCAGTCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGATTTGACATTGT 4126338
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | ||||| ||||| || |||| |||||||| |||||||| || ||||| || |
Sbjct 4126339 CGATTGTGTCTGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 4126398
Query 42199 AG 42200
||
Sbjct 4126399 AG 4126400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212711727920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |