Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5 125 7e-24 seq3 89.7 5e-13 >seq5 Length=3889323 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| |||||||| || ||||| || | | |||||| ||||| Sbjct 1366559 AGGACGAGATGGAGAGTCGACTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCT 1366500 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || ||| | ||||| || ||||| ||||||||||| || || || ||| Sbjct 1366499 TCAAGTTGCTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGAATGCCCTCCTTGTCT 1366440 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | ||||| | | || || || | || | |||| Sbjct 1366439 TGGATCTTGCTCTTGACGTTGTCGATGGTATCGCTCGACTCGACCTCAAGGGTGATGGTC 1366380 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | ||| || ||||| |||||||| Sbjct 1366379 TTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 1366348 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| || || ||||| | || ||||| || || |||||||| |||| Sbjct 1366803 ACCACCACGAAGTCTGAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGA 1366744 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || |||| ||||||||||||||||| | || | |||||||||||||| || Sbjct 1366743 GAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGG 1366684 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| ||||| ||| || || | |||||| || || || Sbjct 1366683 GATACCCTCCTTGTCTTGAATTTTCGACTTGACGTTGTCAATTGTATCCGAGGATTCGAC 1366624 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || | |||||||| || | || || ||||| |||||||| Sbjct 1366623 CTCTAGCGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATTTGCAT 1366576 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| ||| ||||| || || | || || || ||||||||||| || | Sbjct 1367031 ACCGCCACGCAGTCTCAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGA 1366972 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||||||||||||||||||||| | || | | |||||||||||| || Sbjct 1366971 CAGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGG 1366912 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | || || | || || Sbjct 1366911 GATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 1366852 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||||||||||||| || || ||||| || ||||| Sbjct 1366851 TTCCAATGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | |||||| | || || ||||| || || Sbjct 1366316 GTCGACTCTTTCTGGATGTTGTAATCGCTCAGGGTGCGGCCATCCTCGAGCTGTTTACCA 1366257 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| |||||||| || |||||||| ||||| || || || || || ||| Sbjct 1366256 GCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTG 1366197 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | | || || || | || | ||||||||||| | || Sbjct 1366196 ACATTGTCGATGGTGTCGCTCGACTCAACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTC 1366137 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 1366136 TTGACGAAGATCTGCAT 1366120 >seq3 Length=4945454 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | || || || || ||||| ||||| || || || ||| |||| || | Sbjct 2827483 ACCGCCCCGGAGACTGAGGACCAGGTGAATGGTCGACTCCTTCTGGATGCTGTAGTCCGA 2827542 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| ||||| | || ||||||||||| | || || || |||||||||| ||| Sbjct 2827543 AAGGGTGCGTCCGTCTGCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGCAGG 2827602 Query 64336 AATTCCTTCTTT 64347 ||||| ||| || Sbjct 2827603 AATTCTTTCCTT 2827614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644718807720