Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq5 136 4e-27
seq1 89.7 5e-13
>seq5
Length=3889323
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || |||||||| || || |||||||||| |
Sbjct 1366346 CCACCACGGAGACGGAGGACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGTAATCGCTC 1366287
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || |||||||| |||||| |||| | ||||||||||| |||||
Sbjct 1366286 AGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGA 1366227
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||| ||||||||| ||| || ||||| | |||| |||||| | ||| ||
Sbjct 1366226 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCAACC 1366167
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || |||||||| || || || || || |||||||||
Sbjct 1366166 TCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 1366119
Score = 122 bits (134), Expect = 8e-23
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || ||||| ||||| ||| || ||| || || || ||||| || || ||| |
Sbjct 1366995 CTCCTTCTGAATGTTGTAGTCGGACAGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAA 1366936
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041
|||||||| |||||| ||||| || ||||||||||||||| ||| ||| ||||| |
Sbjct 1366935 GATCAATCTCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATT 1366876
Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|| | |||||| | ||||| ||||| | || | || |||||||||| || || ||
Sbjct 1366875 GTCAATGGTGTCTGAGCTCTCAACTTCCAATGTAATGGTCTTGCCGGTCAAGGTCTTGAC 1366816
Query 127102 AAAAATCTGCAT 127113
|| ||||||||
Sbjct 1366815 GAAGATCTGCAT 1366804
Score = 118 bits (130), Expect = 1e-21
Identities = 147/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||||||||| |||||||| ||| | ||||| || || || || ||||||
Sbjct 1366544 GTCGACTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCA 1366485
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | || |||||||||||||| |||||||||||||| ||| || ||||
Sbjct 1366484 GCAAAGATGAGACGTTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTG 1366425
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||| || | |||||| || | ||| | || |||||||| |||||
Sbjct 1366424 ACGTTG-TCGATGGTATCGCTCGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGAGT 1366366
Query 127096 TTTTACAAAAATCTGCATG 127114
|| || || || ||||||
Sbjct 1366365 CTTGACGAAGATTTGCATG 1366347
Score = 82.4 bits (90), Expect = 7e-11
Identities = 114/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || ||| |||||||||||||||| ||||| || || |||||||||
Sbjct 1366730 TCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTG 1366671
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|| |||||| ||||| |||| || | || |||| ||||| || | || |
Sbjct 1366670 TCTTGAATTTTCGACTTGACGTTG-TCAATTGTATCCGAGGATTCGACCTCTAGCGTGAT 1366612
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| ||||| || || || || || || || ||||||
Sbjct 1366611 AGTCTTGCCCGTGAGGGTCTTCACGAAGATTTGCATG 1366575
>seq1
Length=6061779
Score = 89.7 bits (98), Expect = 5e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
||||| |||||||| |||| || ||| || || || || || || || ||| |||||
Sbjct 4126221 TTTTGGATATTGTAGTCGCTCAACGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATC 4126280
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| ||||||||| ||||| || |||||||||||||| ||| || |||| | |||
Sbjct 4126281 AGTCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGATTTGACATTGTCG 4126340
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| ||||| | ||||| |||| ||| | || ||||| || || || || || ||
Sbjct 4126341 ATTGTGTCTGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 4126399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500722731120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |