Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 1e-13 seq5 89.7 5e-13 >seq4 Length=4310093 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 ||| ||||| || || |||||||||||||| || |||||||||||||| | ||| |||| Sbjct 3511386 CGAGACCGGTACTCCCTACATGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAA 3511445 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC 123724 |||||||| || || | | ||||||||| |||| || |||| | || | | Sbjct 3511446 GAACTTGGGCACCATTCGAAGCTCAAATCTTTGCACCGAGATCGTCGAGTTCACTGCGCC 3511505 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTC 123754 || | || || || || ||||||||||| Sbjct 3511506 AGACGAGGTTGCTGTCTGCAATTTGGCTTC 3511535 >seq5 Length=3889323 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || || || ||||||||||| || ||| Sbjct 1366577 ATGCCACCACGGAGACGGAGGACGAGATGGAGAGTCGACTCTTTTTGGATATTGTAGTCG 1366518 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||| ||||| || | || | |||||||| || || Sbjct 1366517 GAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGTTGCTGATCGGGA 1366458 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || ||||| || || |||| || | || | ||| ||| ||||| Sbjct 1366457 GGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGA-CGTTGTCGATGGTATCGCTCGACTC 1366399 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | || |||||||| ||||| || || || |||||||| Sbjct 1366398 GACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 1366348 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || || | || ||||| || || |||||||| ||||| || || || Sbjct 1366805 ATACCACCACGAAGTCTGAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCT 1366746 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || || || ||| | |||||||| |||||||| || Sbjct 1366745 GAGAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGT 1366686 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || ||||||||||| |||| || | || | || || || || || Sbjct 1366685 GGGATACCCTCCTTGTCTTGAATTTTCGACTTGA-CGTTGTCAATTGTATCCGAGGATTC 1366627 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | || ||||| || || || || || || |||||||| Sbjct 1366626 GACCTCTAGCGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATTTGCAT 1366576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003126549480