Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq5 147 2e-30
seq1 113 5e-20
seq3 89.7 6e-13
>seq5
Length=3889323
Score = 147 bits (162), Expect = 2e-30
Identities = 163/216 (75%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
|| |||||| ||||| || |||||||| || || ||||||||||| || || || ||||
Sbjct 1367016 CAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTTCGGCCGTC 1366957
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| ||||||||||||||||| ||||| | ||||||||||| || | || |||||||||
Sbjct 1366956 TTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATGCCCTCCTTGTC 1366897
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGAT 46557
| ||||||| ||||| | | | ||||| |||| || || |||| || ||
Sbjct 1366896 CTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAGCTC---TCAACTTCCAATGTAAT 1366840
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| |||| || || || ||||| |||||
Sbjct 1366839 GGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804
Score = 129 bits (142), Expect = 7e-25
Identities = 146/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| |||||||||||||||||||| || ||||| |||| || || ||||| || || ||
Sbjct 1366539 CTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 1366480
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | || ||||| |||| || | || ||||||||| |||||| |||||| |||
Sbjct 1366479 GATGAGACGTTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGA-CGT 1366421
Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | || |||||||| || || || | |||||||| ||||| || || || || |
Sbjct 1366420 TGTCGATGGTATCGCTCGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 1366361
Query 46581 CAAAGATTTGCAT 46593
| |||||||||||
Sbjct 1366360 CGAAGATTTGCAT 1366348
Score = 127 bits (140), Expect = 2e-24
Identities = 145/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||| || || || || |||| || |||||||||||||||||
Sbjct 1366766 TCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 1366707
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||||||||||| || | | ||||||||| || ||| ||||| |||
Sbjct 1366706 ATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGAATTTTCGACTTGA-CGTT 1366648
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || || ||||| || || | |||||| || |||||||| || || || ||
Sbjct 1366647 GTCAATTGTATCCGAGGATTCGACCTCTAGCGTGATAGTCTTGCCCGTGAGGGTCTTCAC 1366588
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 1366587 GAAGATTTGCAT 1366576
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| |||| ||| ||| || ||||| ||||| ||| || ||||| | || |||
Sbjct 1366328 ACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGTAATCGCTCAGGGTGCGGCCATCCTCG 1366269
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||| || || ||||| || | ||||||||| || | || | || ||||||||| |
Sbjct 1366268 AGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 1366209
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| |||||| | | | ||||||||||| || || || | ||||| || |||
Sbjct 1366208 ATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCAACCTCAAGGGTGATTGTCTTG 1366149
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || || ||||| |||||
Sbjct 1366148 CCGGTGAGGGTCTTGACGAAGATCTGCAT 1366120
>seq1
Length=6061779
Score = 113 bits (124), Expect = 5e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||||||||||||||||||| | || || |||| ||||| |||||||||||||| |
Sbjct 4126219 CCTTTTGGATATTGTAGTCGCTCAACGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGA 4126278
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| ||||||||||||| || | || ||||||||| |||||| |||| |
Sbjct 4126279 TCAGTCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGATTTGACATTGT 4126338
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| ||||| || || | |||||||| |||||||| || || || || |
Sbjct 4126339 CGATTGTGTCTGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 4126398
Query 46584 AG 46585
||
Sbjct 4126399 AG 4126400
>seq3
Length=4945454
Score = 89.7 bits (98), Expect = 6e-13
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||| || || ||||| |||| |||| ||||||||||||||
Sbjct 2827519 CTCCTTCTGGATGCTGTAGTCCGAAAGGGTGCGTCCGTCTGCGAGTTGCTTGCCGGCGAA 2827578
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|||| ||| ||||||||||| || | || ||||||
Sbjct 2827579 GATCAGGCGTTGCTGGTCGGCAGGAATTCTTTCCTTG 2827615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238308148760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |