Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6 165 8e-36 seq5 122 9e-23 seq1 105 7e-18 >seq6 Length=3486194 Score = 165 bits (182), Expect = 8e-36 Identities = 340/499 (68%), Gaps = 10/499 (2%) Strand=Plus/Minus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 |||| || |||||| || ||||| ||||| || ||||| | | | || | |||||| Sbjct 2268874 AGCAACCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGAGTTCATGCCCAGC 2268815 Query 132781 AGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACG 132840 | || || || |||||||| || ||||| || || || ||||| || ||| ||| | Sbjct 2268814 AAACCGACAGGGAGCGCTTCAGTTAGAAACTCTTTTTCAATAGCGACTGCTTCGATGATG 2268755 Query 132841 ATTTCCCTAACGCGCGCCGCGCTCGGCCGT-TGCACCAAATGCTTGAACATCAAGCAAGC 132899 | | | || | || | | |||| | | ||| | ||| | | | | ||| || Sbjct 2268754 ACATTCTCAATGAGCTTTGGG-TCGGGCTTGTGCTTGAGATGTTGCAGGAGGAGGCATGC 2268696 Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAA--GTCAAGCCG 132957 ||| || |||| |||||| || | || |||||||| || ||||| || | || Sbjct 2268695 AAAATCTGTGTGCATGCCCTCATCACGAGAGATGAGTTCATT--TGAAAAGGTGAGACCA 2268638 Query 132958 GGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACG 133017 ||||| ||||| | |||||||| || || || || || || |||||||||| Sbjct 2268637 GGCATCAGGCCCTTGCTCTTGAGCCAGAAAATCGCAGCAAATGATCCAGAAAAGAAGATA 2268578 Query 133018 CCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATC 133077 ||||||||||| |||||||| ||||| || | |||| |||| || || | |||| Sbjct 2268577 CCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCGAAAGTGGACTCCTTATCAGAGATC 2268518 Query 133078 CAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAAC 133137 || | || ||||| |||||||| | || ||| || || || ||||| || | ||| Sbjct 2268517 CATCTAAGAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTGTCGATAGCATCGAAC 2268458 Query 133138 AAACGGAGTTTCTCTTCCGAGGAACG--CACGTAGGTGTCGATGAGGGTCGAATACATTT 133195 | | ||||||| ||| || |||||| |||||||||||| |||||||| | Sbjct 2268457 AGGTAGGTCTTCTCTT--TGGGATCGCTCACGTATGTGTCGATGAGGAGTGAATACATCT 2268400 Query 133196 CCGAGTGTACGTTCTCCAT 133214 | ||||| | ||||||||| Sbjct 2268399 CGGAGTGGATGTTCTCCAT 2268381 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATT 133286 ||||| || || ||||| || ||||||||||| | || ||||||||| | ||| || Sbjct 2268315 CCGTAGAAACAGCGCGCTTCAGGTACCTGCACTTC-GGCGCTGAAACGCTCCAGCAGGTT 2268257 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| |||||||| || ||||| || || || || || || ||| | ||| Sbjct 2268256 CTCGTTGACAATGCCGTCTGAAGCAGCGAAGAAAGCAAGGACATGGGAGACGAAGTAGCG 2268197 Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 || | | ||||| || | ||| ||| || ||| || |||||||| || || || Sbjct 2268196 TTCATCATTGTTCAGTCGGTTGTGCCAATCGTGCAGGTCTTTCGACAGGTCGACTTCTTC 2268137 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCAC 133446 | |||||||| ||||| || ||||||||| ||||| Sbjct 2268136 TGCTGTCCAAAAGCTAGCCTCAGCACGTTTGTACATGTTCCAC 2268094 >seq5 Length=3889323 Score = 122 bits (134), Expect = 9e-23 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || |||||| | || || ||| | | | Sbjct 1366120 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTTGAGTCGAGC 1366179 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||| || || ||||| | || | Sbjct 1366180 GACACCATCGACAATG--TCAAGAGCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATC 1366237 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| || |||||||| || || | |||||||| | ||| |||| Sbjct 1366238 AGCAGCGCCTCATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTGAGCGATTACA 1366297 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| || || |||| ||||| ||||| || ||| Sbjct 1366298 ACATCCAGAAAGAGTCGACACTGCACTTGGTCCTCCGT 1366335 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||||||||| || ||||| | || ||||| || | Sbjct 1366576 ATGCAAATCTTCGTGAAGACCCTCACGGGCAAGACTATCACGCTAGAGGTCGAATCCTCG 1366635 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || ||||| | ||||| ||||| || || ||||||| Sbjct 1366636 GATACAATTGACAACG-TCAAGTCGAAAATTCAAGACAAGGAGGGTATCCCACCCGACCA 1366694 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| ||||| || |||| || || ||| |||||||| Sbjct 1366695 GCAGCGATTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTCTCAGACTACAA 1366754 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| |||||| | || || ||| | || || Sbjct 1366755 CATCCAGAAGGAATCCACCCTCCATCTCGTTCT 1366787 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||| || | || || ||| | | Sbjct 1366804 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACATTGGAAGTTGAGAGCTCA 1366863 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || || ||||||| Sbjct 1366864 GACACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCCGACCAG 1366923 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | ||| ||||| ||||| || |||| || || || |||||||||| Sbjct 1366924 CAGAGATTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGAACGCTGTCCGACTACAAC 1366983 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| ||| || |||| |||||||| | || | ||||| Sbjct 1366984 ATTCAGAAGGAGAGC-ACTTTGCACCTGGTGCTGAGACTGCGTGGCGG 1367030 >seq1 Length=6061779 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| ||||||||| |||| ||||| || | |||| | Sbjct 4126399 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAATCCTCAGACACAATC 4126340 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | ||| || |||| ||||| ||||| || || ||||||| ||||| || Sbjct 4126339 GACAATGTCAAATCCAAGATCCAAGACAAGGAGGGCATCCCACCCGACCAGCAGCGACTG 4126280 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| || || || |||| || || | | ||||||||| ||||||||| Sbjct 4126279 ATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACGTTGAGCGACTACAATATCCAAAAG 4126220 Query 38433 G 38433 | Sbjct 4126219 G 4126219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172718721920