Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5 145 2e-29 seq4 91.5 3e-13 >seq5 Length=3889323 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| ||||||||||| |||||||| |||| ||| || | || ||||| Sbjct 1366556 ACGAGATGGAGAGTCGACTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCTTCA 1366497 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||| || ||||| || || ||||||||||| || |||||||| Sbjct 1366496 AGTTGCTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGG 1366437 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || ||||||||| || ||||| || ||| || || |||||||| | ||| Sbjct 1366436 ATCTTGCTCTTGACGTTGTCGATGGTATCGCTCGA---CTCGACCTCAAGGGTGATGGTC 1366380 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||| || ||||| | |||||| Sbjct 1366379 TTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 1366348 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| || ||||| | |||| ||| || ||||| ||||| |||| || |||| Sbjct 1367021 AGTCTCAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTTCGG 1366962 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| |||||||| || |||||||| | || || ||||| || || ||||| || Sbjct 1366961 CCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATGCCCTCC 1366902 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || |||||| || ||||||||||| || || || ||||| | ||| Sbjct 1366901 TTGTCCTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCCAATGTA 1366842 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || ||||| || || ||||| | ||||| Sbjct 1366841 ATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | ||| || || || ||||| || || || || ||||| || | || |||| Sbjct 1366793 AGTCTGAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGG 1366734 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || |||||||| || |||||||| | ||| || ||||| || || || || || Sbjct 1366733 CCGTCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCC 1366674 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| ||||||||| ||||| || ||||| ||| || || || || Sbjct 1366673 TTGTCTTGAATTTTCGACTTGACGTTGTCAATTGTATCCGAGGATTCGACCTCTAGCGTG 1366614 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | || || ||||| | |||||| Sbjct 1366613 ATAGTCTTGCCCGTGAGGGTCTTCACGAAGATTTGCAT 1366576 Score = 127 bits (140), Expect = 5e-24 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || |||||||| || || ||||||||| || || | ||||| |||||||| Sbjct 1366323 GTGCAGTGTCGACTCTTTCTGGATGTTGTAATCGCTCAGGGTGCGGCCATCCTCGAGCTG 1366264 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| |||||||| || || || || || |||||||||||||| ||||| || || || Sbjct 1366263 TTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 1366204 Query 195057 TTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||| || || |||||||| ||| || || |||||||| | ||||| || Sbjct 1366203 GCTCTTGACATTGTCGATGGTGTCGCTCGA---CTCAACCTCAAGGGTGATTGTCTTGCC 1366147 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || ||||| | ||||| Sbjct 1366146 GGTGAGGGTCTTGACGAAGATCTGCAT 1366120 >seq4 Length=4310093 Score = 91.5 bits (100), Expect = 3e-13 Identities = 187/278 (67%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 ||||| || || ||||| | || | |||||| || | || | | || ||| ||| Sbjct 3511177 TTCTATGCTATGTGGACCCCTGACTTGTTCATGGAGCGTGTCGAGAAGAACCAGGAATGG 3511236 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 | |||||||| || ||||||| || ||||| | |||||| || || ||||| || Sbjct 3511237 ACTCTTTTCTGCCCTCATGAAGCACCAGGACTGGCTGATGTCTACGGCGATGAGTTTAAG 3511296 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAA 160768 || || || ||||| ||||| ||||| | | | || ||| |||||||| | Sbjct 3511297 GAGCTCTACGAGAGATATGAAAAGGAGGGCCGTGGCCGTCAGACCGTCAAGGCCCAGAAG 3511356 Query 160769 CTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAG 160828 |||||| || || |||| || || |||| |||| |||| || |||||| Sbjct 3511357 CTGTGGTATGCGATTCTTGAGGCTCAGACCGAGACCGGTACTCCCTACATGCTCTACAAG 3511416 Query 160829 GATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866 |||||| | | ||||| |||||||||||||| || Sbjct 3511417 GATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGG 3511454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481415201971