Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq3 107 2e-17
seq5 91.5 1e-12
>seq3
Length=4945454
Score = 107 bits (118), Expect = 2e-17
Identities = 341/524 (65%), Gaps = 6/524 (1%)
Strand=Plus/Minus
Query 550053 TTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGG 550112
|||| || |||||||| || ||||| ||| |||| || || || | ||| | || || |
Sbjct 1301788 TTGAGATCATTGCCAACGACCAAGGCAACCGAACCACCCCCTCCTTTGTCGCCTTTACCG 1301729
Query 550113 AAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATA 550172
| ||||| | | | |||||||||| || || |||||| | || |||||| || |
Sbjct 1301728 ACACTGAGCGTCTTATTGGTGATGCCGCCAAGAATCAAGTCGCTATGAATCCTCAGAACA 1301669
Query 550173 CTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAG 550232
| | || || || || || | || || | | || |||| | || || || |
Sbjct 1301668 CAGTCTTCGACGCGAAGCGACTGATCGGCCGGAAATTCGCTGATGCCGAAGTCCAAGCCG 1301609
Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT- 550291
| |||||||| | |||||| | | ||| | || || || |||||||
Sbjct 1301608 ACATGAAGCACTTTCCTTTCAAGGTCGTTGACAAGGGAGGCAAGCCCGTCATTGAAGTCG 1301549
Query 550292 -ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350
| ||| |||| |||||||| |||| ||| | || || || |||||| | |
Sbjct 1301548 AATTCA--AAGGCGAAAAGAAACAATTCACACCCGAAGAGATCTCGTCAATGGTTCTCAC 1301491
Query 550351 GAAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409
|| |||| | | || || ||| | | | ||| |||| | || || | |
Sbjct 1301490 AAAGATGAGAGAGACCGCTGAGT-CATACCTCGGTGGCACCGTTAACAACGCTGTCGTCA 1301432
Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469
|||| || ||||| || || ||||| ||||||||||| || ||||| || || || |
Sbjct 1301431 CTGTCCCCGCATACTTCAACGACTCCCAACGTCAAGCCACAAAAGACGCAGGTTTGATCG 1301372
Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529
| || || ||||| || ||||| ||||| || || ||||| || || |||| ||||| |
Sbjct 1301371 CAGGTCTCAATGTCCTCCGTATCATCAACGAGCCGACTGCCGCCGCCATTGCCTATGGTC 1301312
Query 550530 TTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573
| || || | | || || | ||||| |||||||| |||
Sbjct 1301311 TCGACAAGAAGACCGAGGGTGAGCGCAATGTCCTCATCTTCGAT 1301268
>seq5
Length=3889323
Score = 91.5 bits (100), Expect = 1e-12
Identities = 156/222 (70%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
||||||||| || ||||| || || ||| | ||||| |||||||| || | || ||
Sbjct 1366566 GAGACGGAGGACGAGATGGAGAGTCGACTCTTTTTGG--ATATTGTAGTCGGAAAGGGTG 1366509
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||||||||||| ||||| ||||| || || | ||||||||| |||||||| ||
Sbjct 1366508 CGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGAATGCCC 1366449
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432
|| || ||||| || || || || || || ||||| | || | | || ||
Sbjct 1366448 TCCTTGTCTTGGATCTTGCTCTTGACGTTGTCGATGGTATC-GCTCGACTCGACCTCAAG 1366390
Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| | || || || || ||||| || ||||| ||||||||
Sbjct 1366389 GGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 1366348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029295312501370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |