Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-17 seq5 91.5 1e-12 >seq3 Length=4945454 Score = 107 bits (118), Expect = 2e-17 Identities = 341/524 (65%), Gaps = 6/524 (1%) Strand=Plus/Minus Query 550053 TTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGG 550112 |||| || |||||||| || ||||| ||| |||| || || || | ||| | || || | Sbjct 1301788 TTGAGATCATTGCCAACGACCAAGGCAACCGAACCACCCCCTCCTTTGTCGCCTTTACCG 1301729 Query 550113 AAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATA 550172 | ||||| | | | |||||||||| || || |||||| | || |||||| || | Sbjct 1301728 ACACTGAGCGTCTTATTGGTGATGCCGCCAAGAATCAAGTCGCTATGAATCCTCAGAACA 1301669 Query 550173 CTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | | || || || || || | || || | | || |||| | || || || | Sbjct 1301668 CAGTCTTCGACGCGAAGCGACTGATCGGCCGGAAATTCGCTGATGCCGAAGTCCAAGCCG 1301609 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT- 550291 | |||||||| | |||||| | | ||| | || || || ||||||| Sbjct 1301608 ACATGAAGCACTTTCCTTTCAAGGTCGTTGACAAGGGAGGCAAGCCCGTCATTGAAGTCG 1301549 Query 550292 -ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | ||| |||| |||||||| |||| ||| | || || || |||||| | | Sbjct 1301548 AATTCA--AAGGCGAAAAGAAACAATTCACACCCGAAGAGATCTCGTCAATGGTTCTCAC 1301491 Query 550351 GAAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 || |||| | | || || ||| | | | ||| |||| | || || | | Sbjct 1301490 AAAGATGAGAGAGACCGCTGAGT-CATACCTCGGTGGCACCGTTAACAACGCTGTCGTCA 1301432 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||| || ||||| || || ||||| ||||||||||| || ||||| || || || | Sbjct 1301431 CTGTCCCCGCATACTTCAACGACTCCCAACGTCAAGCCACAAAAGACGCAGGTTTGATCG 1301372 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | || || ||||| || ||||| ||||| || || ||||| || || |||| ||||| | Sbjct 1301371 CAGGTCTCAATGTCCTCCGTATCATCAACGAGCCGACTGCCGCCGCCATTGCCTATGGTC 1301312 Query 550530 TTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 | || || | | || || | ||||| |||||||| ||| Sbjct 1301311 TCGACAAGAAGACCGAGGGTGAGCGCAATGTCCTCATCTTCGAT 1301268 >seq5 Length=3889323 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| || ||||| || || ||| | ||||| |||||||| || | || || Sbjct 1366566 GAGACGGAGGACGAGATGGAGAGTCGACTCTTTTTGG--ATATTGTAGTCGGAAAGGGTG 1366509 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||||| ||||| ||||| || || | ||||||||| |||||||| || Sbjct 1366508 CGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGAATGCCC 1366449 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || || ||||| || || || || || || ||||| | || | | || || Sbjct 1366448 TCCTTGTCTTGGATCTTGCTCTTGACGTTGTCGATGGTATC-GCTCGACTCGACCTCAAG 1366390 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || || || ||||| || ||||| |||||||| Sbjct 1366389 GGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 1366348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295312501370