Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 168 4e-36 seq5 131 1e-24 >seq3 Length=4945454 Score = 168 bits (186), Expect = 4e-36 Identities = 333/488 (68%), Gaps = 6/488 (1%) Strand=Plus/Minus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || |||||||| |||||||| || |||| || || || | ||| | ||||| || Sbjct 1301786 GAGATCATTGCCAACGACCAAGGCAACCGAACCACCCCCTCCTTTGTCGCCTTTACCGAC 1301727 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 ||||| | ||||||||| ||||| || || |||||| || |||||| || || Sbjct 1301726 ACTGAGCGTCTTATTGGTGATGCCGCCAAGAATCAAGTCGCTATGAATCCTCAGAACACA 1301667 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || || || || || |||| || || || || | |||| || |||||| | || Sbjct 1301666 GTCTTCGACGCGAAGCGACTGATCGGCCGGAAATTCGCTGATGCCGAAGTCCAAGCCGAC 1301607 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| || | ||||| ||||| | | || || || || || |||| || Sbjct 1301606 ATGAAGCACTTTCCTTTCAAGGTCGTTGACAAGGGAGGCAAGCCCGTCATTGAAGTCGAA 1301547 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || ||| |||| |||||||| |||| ||| | || || ||||||||| | | | Sbjct 1301546 TTCAA--AGGCGAAAAGAAACAATTCACACCCGAAGAGATCTCGTCAATGGTTCTCACAA 1301489 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | | ||||| ||| ||||| || || || | | || || | ||| Sbjct 1301488 AGATGAGAGAGACCGCTGAG-TCATACCTCGGTGGCACCGTTAACAACGCTGTCGTCACT 1301430 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || ||||| || || || || ||||||||||| || ||||| || || || ||| Sbjct 1301429 GTCCCCGCATACTTCAACGACTCCCAACGTCAAGCCACAAAAGACGCAGGTTTGATCGCA 1301370 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| ||||| | ||||| || || || || || || ||||| |||| |||||||| Sbjct 1301369 GGTCTCAATGTCCTCCGTATCATCAACGAGCCGACTGCCGCCGCCATTGCCTATGGTCTC 1301310 Query 474869 GATAAGAA 474876 || ||||| Sbjct 1301309 GACAAGAA 1301302 >seq5 Length=3889323 Score = 131 bits (144), Expect = 1e-24 Identities = 165/222 (74%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| |||||||| || ||||| || || ||| | ||| || | || || || | || Sbjct 1366569 ACGGAGACGGAGGACGAGATGGAGAGTCGACTCTTTTTGGATA--TTGTAGTCGGAAAGG 1366512 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | ||||||||||||||||||||||| || |||||||| ||||| |||||||| Sbjct 1366511 GTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGAATG 1366452 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTC 480727 || ||||||||||| ||||| ||||| || || ||||| | | | | || Sbjct 1366451 CCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCGATGGTATCGCTCGACTCGA-CCTC 1366393 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || || || |||||||||||||| ||||| ||||| Sbjct 1366392 AAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATTTG 1366351 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| |||||||| || | || ||||| ||||| | || ||||| ||| || | Sbjct 1366341 ACGGAGACGGAGGACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGTAATC-GCTCAGGG 1366283 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||| || || || || ||||| || || || || || |||||||||||||| | Sbjct 1366282 TGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGC 1366223 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCA 480728 |||||||||| || ||||| |||||| || || || || | | | || ||| Sbjct 1366222 CTTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCAA-CCTCA 1366164 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || |||||||| ||||| ||||| || || Sbjct 1366163 AGGGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 1366123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178642366924