Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq3 168 4e-36
seq5 131 1e-24
>seq3
Length=4945454
Score = 168 bits (186), Expect = 4e-36
Identities = 333/488 (68%), Gaps = 6/488 (1%)
Strand=Plus/Minus
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
|| || |||||||| |||||||| || |||| || || || | ||| | ||||| ||
Sbjct 1301786 GAGATCATTGCCAACGACCAAGGCAACCGAACCACCCCCTCCTTTGTCGCCTTTACCGAC 1301727
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
||||| | ||||||||| ||||| || || |||||| || |||||| || ||
Sbjct 1301726 ACTGAGCGTCTTATTGGTGATGCCGCCAAGAATCAAGTCGCTATGAATCCTCAGAACACA 1301667
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
| || || || || || |||| || || || || | |||| || |||||| | ||
Sbjct 1301666 GTCTTCGACGCGAAGCGACTGATCGGCCGGAAATTCGCTGATGCCGAAGTCCAAGCCGAC 1301607
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629
||| || | ||||| ||||| | | || || || || || |||| ||
Sbjct 1301606 ATGAAGCACTTTCCTTTCAAGGTCGTTGACAAGGGAGGCAAGCCCGTCATTGAAGTCGAA 1301547
Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689
| || ||| |||| |||||||| |||| ||| | || || ||||||||| | | |
Sbjct 1301546 TTCAA--AGGCGAAAAGAAACAATTCACACCCGAAGAGATCTCGTCAATGGTTCTCACAA 1301489
Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748
| |||| | | ||||| ||| ||||| || || || | | || || | |||
Sbjct 1301488 AGATGAGAGAGACCGCTGAG-TCATACCTCGGTGGCACCGTTAACAACGCTGTCGTCACT 1301430
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
|| || ||||| || || || || ||||||||||| || ||||| || || || |||
Sbjct 1301429 GTCCCCGCATACTTCAACGACTCCCAACGTCAAGCCACAAAAGACGCAGGTTTGATCGCA 1301370
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
||||| ||||| | ||||| || || || || || || ||||| |||| ||||||||
Sbjct 1301369 GGTCTCAATGTCCTCCGTATCATCAACGAGCCGACTGCCGCCGCCATTGCCTATGGTCTC 1301310
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 1301309 GACAAGAA 1301302
>seq5
Length=3889323
Score = 131 bits (144), Expect = 1e-24
Identities = 165/222 (74%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
||| |||||||| || ||||| || || ||| | ||| || | || || || | ||
Sbjct 1366569 ACGGAGACGGAGGACGAGATGGAGAGTCGACTCTTTTTGGATA--TTGTAGTCGGAAAGG 1366512
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|| | | ||||||||||||||||||||||| || |||||||| ||||| ||||||||
Sbjct 1366511 GTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGAATG 1366452
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTC 480727
|| ||||||||||| ||||| ||||| || || ||||| | | | | ||
Sbjct 1366451 CCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCGATGGTATCGCTCGACTCGA-CCTC 1366393
Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||||| || || || |||||||||||||| ||||| |||||
Sbjct 1366392 AAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATTTG 1366351
Score = 91.5 bits (100), Expect = 1e-12
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609
||| |||||||| || | || ||||| ||||| | || ||||| ||| || |
Sbjct 1366341 ACGGAGACGGAGGACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGTAATC-GCTCAGGG 1366283
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
| | | ||| || || || || ||||| || || || || || |||||||||||||| |
Sbjct 1366282 TGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGC 1366223
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCA 480728
|||||||||| || ||||| |||||| || || || || | | | || |||
Sbjct 1366222 CTTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCAA-CCTCA 1366164
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || |||||||| ||||| ||||| || ||
Sbjct 1366163 AGGGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 1366123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268178642366924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |