Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq2 122 1e-21
seq4 113 6e-19
seq8 102 1e-15
seq1 95.1 1e-13
seq6 87.8 2e-11
>seq2
Length=5161063
Score = 122 bits (134), Expect = 1e-21
Identities = 133/174 (76%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 1592120 GACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTT 1592178
|||||| | ||||||| || |||| ||| | ||||| ||| | || || ||| |
Sbjct 2937174 GACATCGAGGAGTGGGACCAGAAGTTCATGC-AGGTCGATCAGGAAATGCTGTTCGAGAT 2937232
Query 1592179 GATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGT 1592238
|||||||| || ||||| ||||| |||||| |||| || || |||| |||||| | ||
Sbjct 2937233 CATCCTCGCGGCAAACTATCTCGATATCAAGGCTCTTCTGGACGTTGGCTGCAAGACAGT 2937292
Query 1592239 GGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
|| |||||||||||||| || ||||||||||||||||| || || || || ||
Sbjct 2937293 TGCGAACATGATCAAGGGGAAATCGCCCGAGGAGATCCGGAAAACTTTCAATAT 2937346
>seq4
Length=4310093
Score = 113 bits (124), Expect = 6e-19
Identities = 185/267 (69%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121
|| ||||||||||||||| ||||| | ||| || || || | ||| || | ||| || ||
Sbjct 3511059 GCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAAACACGCAACATAGGAATGAGCCCATT 3511000
Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181
|| || || || || || | ||||| ||| | || || | ||| || |
Sbjct 3510999 TGATGTTCCATTAGTTCCTGCAATGTAGGAGCCAGTTGCACGGATGCAGTGGGCATTGAG 3510940
Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241
|||||||| || || | ||||||||| | || || ||||| ||||| ||||||||
Sbjct 3510939 ACCGATGCCACCAGCGGTCTTGGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATGCC 3510880
Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301
|||||| || |||||||||| | | ||||| || || || || || | ||
Sbjct 3510879 CTCGATGCTATCATCCTTCATGTCGATCAAGAAGCAGGAGGACAGCTGGGGCTGTGGTGT 3510820
Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGC 1630328
||||| |||||||||||||| | |||
Sbjct 3510819 TCCGGCATTGAAGAGCGTGGGTGACGC 3510793
Score = 86.0 bits (94), Expect = 8e-11
Identities = 108/147 (73%), Gaps = 1/147 (1%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|||||||| || ||||||||||| |||||| |||||| ||| ||||| || ||
Sbjct 3504491 GACAGCATTGGTGGCACGGTGACTTGCGTGATTCGCAATTGTCCGATCGGCCTGGGAGAA 3504550
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|||||||| ||||| | ||||| | | || || |||||| || || || || ||
Sbjct 3504551 CCGTGCTTCGACAAATTGGAGGCAGAATTGGCACATGCCATGTTGAGCATACCTGCTACG 3504610
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTTT 19193
|| || ||||||||||| | | |||||
Sbjct 3504611 AAAGGGTTCGAGATTGG-ATCAGGTTT 3504636
>seq8
Length=1848290
Score = 102 bits (112), Expect = 1e-15
Identities = 134/185 (72%), Gaps = 3/185 (2%)
Strand=Plus/Minus
Query 1572506 TCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATG 1572565
||| |||| | |||||||| |||| || |||||||||||| |||||||| ||||||
Sbjct 1385342 TCGACGTCCGCATGGTTGAACAGCAACACTTTCACCTCGCCGCGGTAGTCGGCGTCGATG 1385283
Query 1572566 ACGCCTGCGCCGACGTCGAT---GCCCCTGACGGCCAGGGACGAGCGCGGCGCCACGCGC 1572622
|| || ||||| |||||| | | || | |||||| ||| || ||||| | |||
Sbjct 1385282 ACCCCCGCGCCCGTGTCGATGAAGTGCTTGGCCGCCAGGCCCGACCGGGGCGCGATCCGC 1385223
Query 1572623 CCATAGTAGCCCGCGGGTATGGCCACGGCCAGACCGGTGCGCACCTGCGCGCGGCCGCGT 1572682
|| || |||| |||| |||| | |||||| | || |||| |||| |||||||
Sbjct 1385222 CCGTACGTGCCCTCGGGCGTGGCGATGGCCAGGTCCGTCGACACCAGCGCCTTGCCGCGT 1385163
Query 1572683 GCCGG 1572687
|||||
Sbjct 1385162 GCCGG 1385158
>seq1
Length=6061779
Score = 95.1 bits (104), Expect = 1e-13
Identities = 325/493 (66%), Gaps = 18/493 (4%)
Strand=Plus/Plus
Query 1852158 GCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGT 1852217
|||||| ||||| || || ||||||||| || ||||| || || || || | || |
Sbjct 3548028 GCGCAAGAGCAAAGATTTTACGCTGGTCGACACCACCAAATTGCGCATCAACACCTAGAT 3548087
Query 1852218 GCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCA--CGTTGCTCAGGAGCGGGTTGCG 1852275
|||||||||| || || ||||| ||||| |||| | | | | | ||| ||
Sbjct 3548088 GCTGCTCGTCAAGTGCTTGCATTAGCGGATAGATAAGCCCTGACAACGTAGCA--TTCTC 3548145
Query 1852276 GTCCATCTTGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGC-CGGTGCGCACG-TGCG 1852331
| || ||| || |||| || | ||||| | ||| ||||| ||||| |||| |||
Sbjct 3548146 GACCTGCTTAACGACCTCCGCACCAGCCTTCTTCGCATCGTGCTCGGTGACCACGCTGCT 3548205
Query 1852332 CCGCGAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCA 1852391
| | ||| ||| || | || |||| | | | | ||||| | || | |
Sbjct 3548206 C----AATCGAAAGACATCCATCGTGTAGTCAGCACTTAATTGGTAGGATGAACCAAGGA 3548261
Query 1852392 CAAACTCGAG-TCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAAC 1852450
|||| || | | | || ||| | ||||||| || ||||| | || ||| ||
Sbjct 3548262 CAAATTCCAACTTCTCCAAGCTG-ACGCCGACCGCCTTGAGCAGTGACTGAATGATGTAC 3548320
Query 1852451 TCGTACCAG-CGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCG-TTGTCGAGGT 1852508
| ||| | | |||| | || |||||| || |||| ||| | | ||||||||
Sbjct 3548321 TTGTAGTATTCCGCACGGAACTT-GACCAGCTCAATGGGCG-CTTTCAGATTGTCGAGAA 3548378
Query 1852509 GGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCA 1852568
| |||| | |||||| | ||||||||||||| ||||| ||| | || |||| || |
Sbjct 3548379 AGCCGTGGATGTCGGCCAGCAGGATCTTGACCCTGCAGCCCGCCCGTAGGAAGTGCGCAA 3548438
Query 1852569 GTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAAT 1852628
|| | |||||||| ||||| || |||||| ||||||| | || || ||||| |
Sbjct 3548439 TCTTCATCATGGGCACGAAGTAACCGCAGTGCGGTCTGCCCGTGGTAGCTGTTCCCCAGT 3548498
Query 1852629 ATATGATCAGGGG 1852641
| |||| ||||||
Sbjct 3548499 AGATGACCAGGGG 3548511
>seq6
Length=3486194
Score = 87.8 bits (96), Expect = 2e-11
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|||| ||||||||||||||||| ||||||||||||||||| || ||||||||| |
Sbjct 2268874 AGCAACCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGAGTTCATGCCCAGC 2268815
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
| | || || |||| || | | ||||||||| || || |||| || |||| ||||
Sbjct 2268814 AAACCGACAGGGAGCGCTTCAGTTAGAAACTCTTTTTCAATAGCGACTGCTTCGATGATG 2268755
Query 868931 A 868931
|
Sbjct 2268754 A 2268754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107138133159121
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |