Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-21 seq4 113 6e-19 seq8 102 1e-15 seq1 95.1 1e-13 seq6 87.8 2e-11 >seq2 Length=5161063 Score = 122 bits (134), Expect = 1e-21 Identities = 133/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 1592120 GACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTT 1592178 |||||| | ||||||| || |||| ||| | ||||| ||| | || || ||| | Sbjct 2937174 GACATCGAGGAGTGGGACCAGAAGTTCATGC-AGGTCGATCAGGAAATGCTGTTCGAGAT 2937232 Query 1592179 GATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGT 1592238 |||||||| || ||||| ||||| |||||| |||| || || |||| |||||| | || Sbjct 2937233 CATCCTCGCGGCAAACTATCTCGATATCAAGGCTCTTCTGGACGTTGGCTGCAAGACAGT 2937292 Query 1592239 GGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 || |||||||||||||| || ||||||||||||||||| || || || || || Sbjct 2937293 TGCGAACATGATCAAGGGGAAATCGCCCGAGGAGATCCGGAAAACTTTCAATAT 2937346 >seq4 Length=4310093 Score = 113 bits (124), Expect = 6e-19 Identities = 185/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||||||||| ||||| | ||| || || || | ||| || | ||| || || Sbjct 3511059 GCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAAACACGCAACATAGGAATGAGCCCATT 3511000 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || || || || || || | ||||| ||| | || || | ||| || | Sbjct 3510999 TGATGTTCCATTAGTTCCTGCAATGTAGGAGCCAGTTGCACGGATGCAGTGGGCATTGAG 3510940 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||||| || || | ||||||||| | || || ||||| ||||| |||||||| Sbjct 3510939 ACCGATGCCACCAGCGGTCTTGGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATGCC 3510880 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 |||||| || |||||||||| | | ||||| || || || || || | || Sbjct 3510879 CTCGATGCTATCATCCTTCATGTCGATCAAGAAGCAGGAGGACAGCTGGGGCTGTGGTGT 3510820 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGC 1630328 ||||| |||||||||||||| | ||| Sbjct 3510819 TCCGGCATTGAAGAGCGTGGGTGACGC 3510793 Score = 86.0 bits (94), Expect = 8e-11 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| || ||||||||||| |||||| |||||| ||| ||||| || || Sbjct 3504491 GACAGCATTGGTGGCACGGTGACTTGCGTGATTCGCAATTGTCCGATCGGCCTGGGAGAA 3504550 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 |||||||| ||||| | ||||| | | || || |||||| || || || || || Sbjct 3504551 CCGTGCTTCGACAAATTGGAGGCAGAATTGGCACATGCCATGTTGAGCATACCTGCTACG 3504610 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTTT 19193 || || ||||||||||| | | ||||| Sbjct 3504611 AAAGGGTTCGAGATTGG-ATCAGGTTT 3504636 >seq8 Length=1848290 Score = 102 bits (112), Expect = 1e-15 Identities = 134/185 (72%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 1572506 TCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATG 1572565 ||| |||| | |||||||| |||| || |||||||||||| |||||||| |||||| Sbjct 1385342 TCGACGTCCGCATGGTTGAACAGCAACACTTTCACCTCGCCGCGGTAGTCGGCGTCGATG 1385283 Query 1572566 ACGCCTGCGCCGACGTCGAT---GCCCCTGACGGCCAGGGACGAGCGCGGCGCCACGCGC 1572622 || || ||||| |||||| | | || | |||||| ||| || ||||| | ||| Sbjct 1385282 ACCCCCGCGCCCGTGTCGATGAAGTGCTTGGCCGCCAGGCCCGACCGGGGCGCGATCCGC 1385223 Query 1572623 CCATAGTAGCCCGCGGGTATGGCCACGGCCAGACCGGTGCGCACCTGCGCGCGGCCGCGT 1572682 || || |||| |||| |||| | |||||| | || |||| |||| ||||||| Sbjct 1385222 CCGTACGTGCCCTCGGGCGTGGCGATGGCCAGGTCCGTCGACACCAGCGCCTTGCCGCGT 1385163 Query 1572683 GCCGG 1572687 ||||| Sbjct 1385162 GCCGG 1385158 >seq1 Length=6061779 Score = 95.1 bits (104), Expect = 1e-13 Identities = 325/493 (66%), Gaps = 18/493 (4%) Strand=Plus/Plus Query 1852158 GCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGT 1852217 |||||| ||||| || || ||||||||| || ||||| || || || || | || | Sbjct 3548028 GCGCAAGAGCAAAGATTTTACGCTGGTCGACACCACCAAATTGCGCATCAACACCTAGAT 3548087 Query 1852218 GCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCA--CGTTGCTCAGGAGCGGGTTGCG 1852275 |||||||||| || || ||||| ||||| |||| | | | | | ||| || Sbjct 3548088 GCTGCTCGTCAAGTGCTTGCATTAGCGGATAGATAAGCCCTGACAACGTAGCA--TTCTC 3548145 Query 1852276 GTCCATCTTGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGC-CGGTGCGCACG-TGCG 1852331 | || ||| || |||| || | ||||| | ||| ||||| ||||| |||| ||| Sbjct 3548146 GACCTGCTTAACGACCTCCGCACCAGCCTTCTTCGCATCGTGCTCGGTGACCACGCTGCT 3548205 Query 1852332 CCGCGAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCA 1852391 | | ||| ||| || | || |||| | | | | ||||| | || | | Sbjct 3548206 C----AATCGAAAGACATCCATCGTGTAGTCAGCACTTAATTGGTAGGATGAACCAAGGA 3548261 Query 1852392 CAAACTCGAG-TCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAAC 1852450 |||| || | | | || ||| | ||||||| || ||||| | || ||| || Sbjct 3548262 CAAATTCCAACTTCTCCAAGCTG-ACGCCGACCGCCTTGAGCAGTGACTGAATGATGTAC 3548320 Query 1852451 TCGTACCAG-CGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCG-TTGTCGAGGT 1852508 | ||| | | |||| | || |||||| || |||| ||| | | |||||||| Sbjct 3548321 TTGTAGTATTCCGCACGGAACTT-GACCAGCTCAATGGGCG-CTTTCAGATTGTCGAGAA 3548378 Query 1852509 GGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCA 1852568 | |||| | |||||| | ||||||||||||| ||||| ||| | || |||| || | Sbjct 3548379 AGCCGTGGATGTCGGCCAGCAGGATCTTGACCCTGCAGCCCGCCCGTAGGAAGTGCGCAA 3548438 Query 1852569 GTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAAT 1852628 || | |||||||| ||||| || |||||| ||||||| | || || ||||| | Sbjct 3548439 TCTTCATCATGGGCACGAAGTAACCGCAGTGCGGTCTGCCCGTGGTAGCTGTTCCCCAGT 3548498 Query 1852629 ATATGATCAGGGG 1852641 | |||| |||||| Sbjct 3548499 AGATGACCAGGGG 3548511 >seq6 Length=3486194 Score = 87.8 bits (96), Expect = 2e-11 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||| ||||||||||||||||| ||||||||||||||||| || ||||||||| | Sbjct 2268874 AGCAACCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGAGTTCATGCCCAGC 2268815 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 | | || || |||| || | | ||||||||| || || |||| || |||| |||| Sbjct 2268814 AAACCGACAGGGAGCGCTTCAGTTAGAAACTCTTTTTCAATAGCGACTGCTTCGATGATG 2268755 Query 868931 A 868931 | Sbjct 2268754 A 2268754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138133159121