Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 104 4e-16 seq3 95.1 2e-13 seq2 95.1 2e-13 seq6 91.5 2e-12 >seq4 Length=4310093 Score = 104 bits (114), Expect = 4e-16 Identities = 183/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| ||||| ||||| | ||| || || || | ||| || | || || || Sbjct 3511059 GCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAAACACGCAACATAGGAATGAGCCCATT 3511000 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 || || || || || || | ||||| ||| | || || | ||| || | Sbjct 3510999 TGATGTTCCATTAGTTCCTGCAATGTAGGAGCCAGTTGCACGGATGCAGTGGGCATTGAG 3510940 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||||| || || | ||||||||| | || || | || || || || |||||||| Sbjct 3510939 ACCGATGCCACCAGCGGTCTTGGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATGCC 3510880 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 |||||| || |||||||||| | || ||||| || || || || | | || Sbjct 3510879 CTCGATGCTATCATCCTTCATGTCGATCAAGAAGCAGGAGGACAGCTGGGGCTGTGGTGT 3510820 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 |||||||||||||||||||| | ||| Sbjct 3510819 TCCGGCATTGAAGAGCGTGGGTGACGC 3510793 Score = 93.3 bits (102), Expect = 7e-13 Identities = 287/446 (64%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 2071573 AACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGT 2071630 |||| ||||| ||||||||| || || | | ||| ||||||||| ||||| ||||| Sbjct 3511496 AACTCGACGATCTCGGTGCAAAGATTTGAG--CTTCGAATGGTGCCCAAGTTCTTCTGGT 3511439 Query 2071631 TGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCG 2071690 |||| || |||| ||| ||||||| ||||||||||| | ||| |||||| |||| | Sbjct 3511438 TGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGTAGGGAGTACCGGTCTCGGTCTGAG 3511379 Query 2071691 CCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGA-GGTC---CTCGCGCGGCCC 2071746 || | || || |||| | || |||| || |||| | | |||||| Sbjct 3511378 CCTCAAGAATCGCATACCACA----GCTTCTGGGCCTTGACGGTCTGACGGCCACGGCCC 3511323 Query 2071747 TNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCG 2071806 | |||| | | ||| | |||||| | || ||| || Sbjct 3511322 TCCTTTTCATATCTCTCGTAGAGCTCCTTAAACTCATCGCCGTAGACATCAGCCAGTCCT 3511263 Query 2071807 GGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAAC 2071866 || || || ||||| || || | ||| || | || | || || ||| ||| Sbjct 3511262 GGTGCTTCATGAGGGCAGAAAAGAGTCCATTCCTGGTTCTTCTCGACACGCTCCATGAAC 3511203 Query 2071867 AGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGG 2071926 | ||| ||||||| | || || || || || || ||| || |||||||||||| Sbjct 3511202 AAGTCAGGGGTCCACATAGCATAGAACAGGTCACGGGCACGGACTTCTTCCTTGCCGTGG 3511143 Query 2071927 TTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCA 2071986 |||||| | || | | |||| | || || |||||||| |||||||||||| |||| Sbjct 3511142 TTCTTTCTTAGATTCAAGAAGTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCA 3511083 Query 2071987 AAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || || || |||||| |||||| Sbjct 3511082 AAAGCACCAGGTCGCTTGTTGCCGCC 3511057 >seq3 Length=4945454 Score = 95.1 bits (104), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||||||||| || || || |||||||| ||| |||| |||||||| ||| Sbjct 3847103 GTACTTGGTGACGGCCTTTGTCCCTTCAGAGACGGCATGCTTGGCAAGTTCGCCAGGCAG 3847162 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 |||||| | || | |||||||||||| |||| Sbjct 3847163 GATCAGTCTGACCGAGGTCTGGATCTCTCGGG 3847194 >seq2 Length=5161063 Score = 95.1 bits (104), Expect = 2e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || || ||| | |||||||| || ||||| ||||| |||||| | || || || | || Sbjct 2937222 CTGTTCGAGATCATCCTCGCGGCAAACTATCTCGATATCAAGGCTCTTCTGGACGTTGGC 2937281 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 |||||||| || || ||| | |||||||| || ||||||||||| ||||| || || || Sbjct 2937282 TGCAAGACAGTTGCGAACATGATCAAGGGGAAATCGCCCGAGGAGATCCGGAAAACTTTC 2937341 Query 2035749 AACAT 2035753 || || Sbjct 2937342 AATAT 2937346 >seq6 Length=3486194 Score = 91.5 bits (100), Expect = 2e-12 Identities = 204/304 (67%), Gaps = 7/304 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || || ||| ||| | ||| || |||| ||| || ||||| ||||| || Sbjct 2268679 CCCTCATCACGAGAGATGAGTTCATTTGAAAAGGTGAGACCAGGCATCAGGCCCTTGCTC 2268620 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAA--AGATGCCCTCGACGGCGGCAA 794458 |||||||| || || ||| | || || | |||||| |||| ||||||||||| || | Sbjct 2268619 TTGAGCCAGAAAATCGCA--GCAAATGATCCAGAAAAGAAGATACCCTCGACGGCTGCGA 2268562 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | | || || || | || |||||| | ||| | |||||| | | |||| Sbjct 2268561 AAGCAACCAGTCGTTGAGCGAAAGTGGACT---CCTTATCAGAGATCCATCTAAGAGCCC 2268505 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || ||||| || | | | || | |||||||| || || |||| | ||||| Sbjct 2268504 AGTCGGCCTTCTTGCGGATGCAAGGGATGGTGTCGATAGCATCGAACAGGTAGGTCTTCT 2268445 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | || || | ||||| |||||||||||||| || || |||| ||||||||||| | Sbjct 2268444 CTTTGGGATCGCTCACGTATGTGTCGATGAGGAGTGAATACATCTCGGAGTGGATGTTCT 2268385 Query 794639 CGAT 794642 | || Sbjct 2268384 CCAT 2268381 Score = 87.8 bits (96), Expect = 3e-11 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 794019 AGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATG 794078 |||| ||||||||||| || |||||||||||||||||||| || ||||||||| | Sbjct 2268874 AGCAACCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGAGTTCATGCCCAGC 2268815 Query 794079 AGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATG 794138 | | || || |||| || | | ||||||||| || || |||| || ||||||||| Sbjct 2268814 AAACCGACAGGGAGCGCTTCAGTTAGAAACTCTTTTTCAATAGCGACTGCTTCGATGATG 2268755 Query 794139 A 794139 | Sbjct 2268754 A 2268754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916245017130707