Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5 118 7e-22 seq3 105 4e-18 seq1 95.1 8e-15 >seq5 Length=3889323 Score = 118 bits (130), Expect = 7e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| |||||||| | |||||||||||||||||||| ||||| || || | || | Sbjct 1367018 CTCAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTTCGGCCG 1366959 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || ||||| ||||||||||||| || |||||||| | || | ||||||||| Sbjct 1366958 TCTTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATGCCCTCCTTG 1366899 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || ||||| | || | || | ||| || || | || ||| Sbjct 1366898 TCCTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCCAATGTAATG 1366839 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | |||||| || ||||||||||| Sbjct 1366838 GTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804 Score = 114 bits (126), Expect = 8e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || || || || || | |||| |||||||| ||||| ||||| || || | || | Sbjct 1366790 CTGAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCG 1366731 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || ||||| ||||||||||||| ||| |||||||| | || | ||||||||| Sbjct 1366730 TCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTG 1366671 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | ||||| |||||| | || | || || ||||| || | || || Sbjct 1366670 TCTTGAATTTTCGACTTGACGTTGTCAATTGTATCCGAGGATTCGACCTCTAGCGTGATA 1366611 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| |||||||||||||| || ||||| |||||| Sbjct 1366610 GTCTTGCCCGTGAGGGTCTTCACGAAGATTTGCATG 1366575 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || || || || ||||| || ||| |||| | || || ||||||||||| || || Sbjct 1366539 CTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 1366480 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||| || | || | ||||||||||| | || || |||||| Sbjct 1366479 GATGAGACGTTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTT 1366420 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | | |||||| |||| ||| |||||||| || ||||| ||||| || Sbjct 1366419 GTCGATGGTATCGCTCGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTGAC 1366360 Query 34966 AAAGATCTGCATG 34978 ||||| |||||| Sbjct 1366359 GAAGATTTGCATG 1366347 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/225 (70%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | || ||| ||||| ||||| || || ||| |||| |||| Sbjct 1366331 AGGACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGTAATCGCTCAGGGTGCGGCCATCC 1366272 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || |||||||| || || ||||| || | || | || |||||||| Sbjct 1366271 TCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 1366212 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | | ||| || |||| ||| || Sbjct 1366211 TGGATCTTGCTCTTGAC--AT--TGTCGATGGTGTCGCTCGACTCAACCTCAAGGGTGAT 1366156 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGGA 34986 ||||| || ||||||||||| || |||||||||||||| | ||| Sbjct 1366155 TGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGATTGCGGA 1366111 >seq3 Length=4945454 Score = 105 bits (116), Expect = 4e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||||||||||||||| ||||||||| ||| | |||||||| ||| |||| | Sbjct 2827496 CTGAGGACCAGGTGAATGGTCGACTCCTTCTGGATGCTGTAGTCCGAAAGGGTGCGTCCG 2827555 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || | |||||||| |||||||||||||| ||||||||||| Sbjct 2827556 TCTGCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTC 2827596 >seq1 Length=6061779 Score = 95.1 bits (104), Expect = 8e-15 Identities = 113/151 (75%), Gaps = 8/151 (5%) Strand=Plus/Plus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || |||||||| ||||||||||||||||| |||||||| | || | ||||||||| Sbjct 4126254 TCTTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGTGGGATGCCCTCCTTG 4126313 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGT 34938 || | || || |||||| || | ||||| || || ||||| || | ||| Sbjct 4126314 TCTTGGATCTTGGATTTGAC--AT--TGTCGATTGTGTCTGAGGATTCGACCTCGAGGGT 4126369 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 |||||||| |||||||||||||| || ||| Sbjct 4126370 GATGGTCTTGCCCGTGAGGGTCTTGACGAAG 4126400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692748398047