Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq5 118 7e-22
seq3 105 4e-18
seq1 95.1 8e-15
>seq5
Length=3889323
Score = 118 bits (130), Expect = 7e-22
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
||||| |||||||| | |||||||||||||||||||| ||||| || || | || |
Sbjct 1367018 CTCAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTTCGGCCG 1366959
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| || || ||||| ||||||||||||| || |||||||| | || | |||||||||
Sbjct 1366958 TCTTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATGCCCTCCTTG 1366899
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
|| | || || ||||| | || | || | ||| || || | || |||
Sbjct 1366898 TCCTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCCAATGTAATG 1366839
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || | |||||| || |||||||||||
Sbjct 1366838 GTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804
Score = 114 bits (126), Expect = 8e-21
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
|| || || || || | |||| |||||||| ||||| ||||| || || | || |
Sbjct 1366790 CTGAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCG 1366731
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| || || ||||| ||||||||||||| ||| |||||||| | || | |||||||||
Sbjct 1366730 TCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTG 1366671
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
|| | ||||| |||||| | || | || || ||||| || | || ||
Sbjct 1366670 TCTTGAATTTTCGACTTGACGTTGTCAATTGTATCCGAGGATTCGACCTCTAGCGTGATA 1366611
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||| |||||||||||||| || ||||| ||||||
Sbjct 1366610 GTCTTGCCCGTGAGGGTCTTCACGAAGATTTGCATG 1366575
Score = 109 bits (120), Expect = 4e-19
Identities = 140/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||| || || || || ||||| || ||| |||| | || || ||||||||||| || ||
Sbjct 1366539 CTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 1366480
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| || |||||||| || | || | ||||||||||| | || || ||||||
Sbjct 1366479 GATGAGACGTTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTT 1366420
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| || | || | | |||||| |||| ||| |||||||| || ||||| ||||| ||
Sbjct 1366419 GTCGATGGTATCGCTCGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTGAC 1366360
Query 34966 AAAGATCTGCATG 34978
||||| ||||||
Sbjct 1366359 GAAGATTTGCATG 1366347
Score = 98.7 bits (108), Expect = 6e-16
Identities = 158/225 (70%), Gaps = 8/225 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | || ||| ||||| ||||| || || ||| |||| ||||
Sbjct 1366331 AGGACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGTAATCGCTCAGGGTGCGGCCATCC 1366272
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || || || || |||||||| || || ||||| || | || | || ||||||||
Sbjct 1366271 TCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 1366212
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || | | ||| || |||| ||| ||
Sbjct 1366211 TGGATCTTGCTCTTGAC--AT--TGTCGATGGTGTCGCTCGACTCAACCTCAAGGGTGAT 1366156
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGGA 34986
||||| || ||||||||||| || |||||||||||||| | |||
Sbjct 1366155 TGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGATTGCGGA 1366111
>seq3
Length=4945454
Score = 105 bits (116), Expect = 4e-18
Identities = 84/101 (83%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
|| ||||||||||||||||| ||||||||| ||| | |||||||| ||| |||| |
Sbjct 2827496 CTGAGGACCAGGTGAATGGTCGACTCCTTCTGGATGCTGTAGTCCGAAAGGGTGCGTCCG 2827555
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863
|| | |||||||| |||||||||||||| |||||||||||
Sbjct 2827556 TCTGCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTC 2827596
>seq1
Length=6061779
Score = 95.1 bits (104), Expect = 8e-15
Identities = 113/151 (75%), Gaps = 8/151 (5%)
Strand=Plus/Plus
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| || |||||||| ||||||||||||||||| |||||||| | || | |||||||||
Sbjct 4126254 TCTTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGTGGGATGCCCTCCTTG 4126313
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGT 34938
|| | || || |||||| || | ||||| || || ||||| || | |||
Sbjct 4126314 TCTTGGATCTTGGATTTGAC--AT--TGTCGATTGTGTCTGAGGATTCGACCTCGAGGGT 4126369
Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969
|||||||| |||||||||||||| || |||
Sbjct 4126370 GATGGTCTTGCCCGTGAGGGTCTTGACGAAG 4126400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692748398047
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |