Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 145 1e-28 seq6 87.8 3e-11 >seq4 Length=4310093 Score = 145 bits (160), Expect = 1e-28 Identities = 209/292 (72%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 259895 ATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||| ||| ||| || || ||| ||| | ||||||||||| |||||||| || || | Sbjct 3510769 ATGTCCCAGAAGTGCTTTAC-TCATGCGTCACCCACGCTCTTCAATGCCGGAACACCACA 3510827 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 || ||| || || ||||| || | |||||||||| ||| |||||||||||||| Sbjct 3510828 GCCCCAGCTGTCCTCCTGCTTCTTGATCGACATGAAGGATGATAGCATCGAGGGCATCTA 3510887 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 |||||| |||||| || || | ||||||||| | || || ||||||||| | || Sbjct 3510888 TGACACACTCAAGACCTGTGCCATGATCTCCAAGACCGCTGGTGGCATCGGTCTCAATGC 3510947 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||| | || || | ||| ||||| | || || || || || || || || || Sbjct 3510948 CCACTGCATCCGTGCAACTGGCTCCTACATTGCAGGAACTAATGGAACATCAAATGGGCT 3511007 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 | || ||| | || ||||| ||| | ||||| ||||||||||||||| || Sbjct 3511008 CATTCCTATGTTGCGTGTTTTCAACAATACGGCCCGCTACGTCGACCAGGGC 3511059 Score = 104 bits (114), Expect = 3e-16 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| || ||| | | ||| || | ||||||||| || ||||||||| |||||||||| Sbjct 3511360 TGGTATGCGATTCTTGAGGCTCAGACCGAGACCGGTACTCCCTACATGCTCTACAAGGAT 3511419 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACCTGT 262214 ||| |||| || ||||||||| ||||| ||||||||| ||| || | || || | Sbjct 3511420 GCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGCACCATTCGA-AGCT-CAAATCTTT 3511477 Query 262215 GCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCTCTCGAGCG 262274 |||||||||||||| |||| | |||| ||||| ||| ||||| | | | Sbjct 3511478 GCACCGAGATCGTCGAGTTCACTGCGCCAGACGAGGTTGCTGTCTGCAATTTGGCTTCCC 3511537 Query 262275 TGGCCCTGCCCAAGTTTGTC 262294 ||||||| |||| || ||| Sbjct 3511538 TGGCCCTTCCCACCTTCGTC 3511557 >seq6 Length=3486194 Score = 87.8 bits (96), Expect = 3e-11 Identities = 186/271 (69%), Gaps = 15/271 (6%) Strand=Plus/Plus Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| || | || || ||||| |||||||| ||||| | || || Sbjct 2268381 ATGGAGAACATCCACTCCGAGATGTATTCACTCCTCATCGACACATACGTGAGCGATCCC 2268440 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 |||||| | |||| || || |||||||| | || | | | || |||||| Sbjct 2268441 AAAGAGAAGACCTACCTGTTCGATGCTATCGACACCATCCCTTGCATCCGCAAGAAGGCC 2268500 Query 1456132 GACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTC 1456187 |||||||| | | |||||| | |||||| || |||||| || | || || Sbjct 2268501 GACTGGGCTCTTAGATGGATCTCTGATAAGGAG----TC--CACTTTCGCTCAACGACTG 2268554 Query 1456188 GTCGGCTTTGCCG-CGTCGAGGGCATCT--TTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244 || | || || | ||||||||| |||| |||||| | || || ||||| || || | Sbjct 2268555 GTTGCTTTCGCAGCCGTCGAGGGTATCTTCTTTTCTGGATCATTTGCTGCG--ATTTTCT 2268612 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||| ||||| ||||| ||||| Sbjct 2268613 GGCTCAAGAGCAAGGGCCTGATGCCTGGTCT 2268643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809946126106