Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 seq8 95.1 1e-14 >seq5 Length=3889323 Score = 123 bits (136), Expect = 2e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | |||| ||||| || || || |||||||| ||||||||||| |||| | Sbjct 1367030 CCGCCACGCAGTCTCAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 1366971 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| |||| || |||||||| || || || ||||| | ||||||||| | || Sbjct 1366970 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGG 1366911 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | || |||||||||| |||||| ||| | | | | | ||||| |||| || Sbjct 1366910 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAGCTC---TCA 1366854 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || || || || || ||||| || || || || |||||||| Sbjct 1366853 ACTTCCAATGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||||||| || ||| || | || || ||||| ||||| || || Sbjct 1366311 CTCTTTCTGGATGTTGTAATCGCTCAGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAA 1366252 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | ||||| || ||||||||| |||||| ||| | | | Sbjct 1366251 GATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATT 1366192 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||||| || ||||| | ||||| || || || || | || || || Sbjct 1366191 GTCGATGGTGTCGCTCGACTCAACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGAC 1366132 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1366131 GAAGATCTGCAT 1366120 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||||| |||| || |||||||| || || || Sbjct 1366766 TCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 1366707 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 ||||| ||||||||||| | || | | |||||||| | ||| ||| | ||| | || Sbjct 1366706 ATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGT-CTTGAATTTTCGACTTGA-CGT 1366649 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || || ||||| ||||| | |||||| || || ||||| | || |||| Sbjct 1366648 TGTCAATTGTATCCGAGGATTCGACCTCTAGCGTGATAGTCTTGCCCGTGAGGGTCTTCA 1366589 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 1366588 CGAAGATTTGCAT 1366576 >seq8 Length=1848290 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 41171 TGTGGATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCA 41230 ||| |||||||||||||| ||||||||||| ||||| || | || | || || | Sbjct 1385398 TGTAGATGCGCTCGAGGACGAGCTGCGCGACGCGATCCCCGCGACTGACGGCGAAATCGA 1385339 Query 41231 CGTCG---TTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGA 41287 |||| | |||| || || |||| | ||| | ||| |||||||| ||||||| Sbjct 1385338 CGTCCGCATGGTTGAACAGCAACACTTT---CACCTCGCCGCGGTAGTCGGCGTCGATGA 1385282 Query 41288 CGCCAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTAC 41347 | || || | ||||||| |||||| |||||| ||||| ||||||||||||| | Sbjct 1385281 CCCCCGCGCCCGTGTCGATGAAGTGCTTGGCCGCCAGGCCCGACCGGGGCGCGATCCGCC 1385222 Query 41348 CGTA 41351 |||| Sbjct 1385221 CGTA 1385218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793526746040